BLASTX nr result

ID: Coptis23_contig00028418 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028418
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310656.1| predicted protein [Populus trichocarpa] gi|2...    84   1e-14
ref|XP_002518251.1| conserved hypothetical protein [Ricinus comm...    79   5e-13
ref|XP_003626832.1| Retrograde Golgi transport protein RGP1-like...    78   7e-13
ref|XP_004154786.1| PREDICTED: uncharacterized protein LOC101223...    73   2e-11
ref|XP_004137181.1| PREDICTED: uncharacterized protein LOC101218...    73   2e-11

>ref|XP_002310656.1| predicted protein [Populus trichocarpa] gi|222853559|gb|EEE91106.1|
           predicted protein [Populus trichocarpa]
          Length = 533

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 36/49 (73%), Positives = 40/49 (81%)
 Frame = +1

Query: 1   RYDHPLLIEGRDKSEWVLPITVHVPPPRTQTAQTRNKKSLSSVPIWVRT 147
           RY+HPLLIEGRDKSEWVLPITVH PPPR   A +RN+K  S  P+WVRT
Sbjct: 485 RYEHPLLIEGRDKSEWVLPITVHAPPPRASAAHSRNEKGFSLEPLWVRT 533


>ref|XP_002518251.1| conserved hypothetical protein [Ricinus communis]
           gi|223542598|gb|EEF44137.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 528

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 34/49 (69%), Positives = 38/49 (77%)
 Frame = +1

Query: 1   RYDHPLLIEGRDKSEWVLPITVHVPPPRTQTAQTRNKKSLSSVPIWVRT 147
           RY+HPLL+EGRDKSEWVLPITVH PPP    A TR+ K  S  P+WVRT
Sbjct: 480 RYEHPLLVEGRDKSEWVLPITVHAPPPGALAAHTRDAKHFSLEPLWVRT 528


>ref|XP_003626832.1| Retrograde Golgi transport protein RGP1-like protein [Medicago
           truncatula] gi|355520854|gb|AET01308.1| Retrograde Golgi
           transport protein RGP1-like protein [Medicago
           truncatula]
          Length = 529

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 33/49 (67%), Positives = 41/49 (83%)
 Frame = +1

Query: 1   RYDHPLLIEGRDKSEWVLPITVHVPPPRTQTAQTRNKKSLSSVPIWVRT 147
           +Y+HPLLIEGR+K+EWVLPITVH PPPRT T+ +RN+K  S  P+WV T
Sbjct: 481 KYEHPLLIEGREKTEWVLPITVHAPPPRTPTSGSRNEKLFSLDPMWVHT 529


>ref|XP_004154786.1| PREDICTED: uncharacterized protein LOC101223298 [Cucumis sativus]
          Length = 427

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 31/49 (63%), Positives = 37/49 (75%)
 Frame = +1

Query: 1   RYDHPLLIEGRDKSEWVLPITVHVPPPRTQTAQTRNKKSLSSVPIWVRT 147
           RY+HPLLIEGR+KSEWVLPITVH PP    TAQ RN +  S  P+W+ +
Sbjct: 379 RYEHPLLIEGREKSEWVLPITVHAPPSSAATAQNRNDRPFSLEPLWMHS 427


>ref|XP_004137181.1| PREDICTED: uncharacterized protein LOC101218523 [Cucumis sativus]
          Length = 538

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 31/49 (63%), Positives = 37/49 (75%)
 Frame = +1

Query: 1   RYDHPLLIEGRDKSEWVLPITVHVPPPRTQTAQTRNKKSLSSVPIWVRT 147
           RY+HPLLIEGR+KSEWVLPITVH PP    TAQ RN +  S  P+W+ +
Sbjct: 490 RYEHPLLIEGREKSEWVLPITVHAPPSSAATAQNRNDRPFSLEPLWMHS 538


Top