BLASTX nr result
ID: Coptis23_contig00028401
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00028401
(990 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002313068.1| predicted protein [Populus trichocarpa] gi|2... 87 9e-18
ref|XP_002519103.1| NAD dependent epimerase/dehydratase, putativ... 89 5e-17
ref|XP_002284662.1| PREDICTED: protein TIC 62, chloroplastic iso... 70 1e-12
ref|XP_003631626.1| PREDICTED: protein TIC 62, chloroplastic iso... 70 1e-12
ref|XP_002306080.1| predicted protein [Populus trichocarpa] gi|2... 77 5e-12
>ref|XP_002313068.1| predicted protein [Populus trichocarpa] gi|222849476|gb|EEE87023.1|
predicted protein [Populus trichocarpa]
Length = 564
Score = 87.4 bits (215), Expect(2) = 9e-18
Identities = 70/198 (35%), Positives = 90/198 (45%), Gaps = 7/198 (3%)
Frame = +3
Query: 12 IKEEEVKPVSSFTEDSSIKEIKKLKPLSPYSAYDDLKXXXXXXXXXXXXXNGHVIVVQAV 191
I E E S E + K + +PLSPY+AY+DLK +V V+AV
Sbjct: 337 IVEPEAPSPPSQREPAQAKAVVT-RPLSPYTAYEDLKPPTSPIPTQPSGKKENVNSVEAV 395
Query: 192 S-----DPAIAASQIDVSALTTEARSSTVKLHDTRPLSPYFVYEDLKXXXXXXXXFSAPR 356
S DP+ A++ + E + + V+ RPLSPY Y+DLK
Sbjct: 396 SMLDTPDPSPASA-----SGIAETKPAPVETKTARPLSPYVAYDDLKPPTSPSPTAPVGL 450
Query: 357 RGFVVAAQPT--NEAVPSSEYSNITEETPTKVFAEVPTPKTSYLSPYPVYDDLKPPTSPS 530
A P N A P++ N E P P P LSPYP+YDDLKPPTSPS
Sbjct: 451 VAITAPAVPKTGNSAPPTAAIDNQHHEEPN------PRP----LSPYPIYDDLKPPTSPS 500
Query: 531 PYAPKVSPLSTSTIEAGS 584
P AP +TS+I A S
Sbjct: 501 PTAPVGLVATTSSINAVS 518
Score = 29.6 bits (65), Expect(2) = 9e-18
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2
Query: 611 YEDLKPPCSPVPSPK 655
YEDLKPP SP PS K
Sbjct: 549 YEDLKPPASPTPSLK 563
Score = 65.9 bits (159), Expect = 1e-08
Identities = 49/159 (30%), Positives = 68/159 (42%), Gaps = 4/159 (2%)
Frame = +3
Query: 69 EIKKLKPLSPYSAYDDLKXXXXXXXXXXXXXNGHVIVVQAVSDPAIAASQIDVSALTTEA 248
E K +PLSPY AYDDLK ++ + A + P S +A+ +
Sbjct: 420 ETKTARPLSPYVAYDDLKPPTSPSPTAPVG----LVAITAPAVPKTGNSAPPTAAIDNQH 475
Query: 249 RSSTVKLHDTRPLSPYFVYEDLKXXXXXXXX----FSAPRRGFVVAAQPTNEAVPSSEYS 416
+ RPLSPY +Y+DLK A ++ N A P++
Sbjct: 476 HEEP----NPRPLSPYPIYDDLKPPTSPSPTAPVGLVATTSSINAVSKTGNNAPPTAAID 531
Query: 417 NITEETPTKVFAEVPTPKTSYLSPYPVYDDLKPPTSPSP 533
N + P P P LSPYP+Y+DLKPP SP+P
Sbjct: 532 NQHHKEPN------PRP----LSPYPMYEDLKPPASPTP 560
>ref|XP_002519103.1| NAD dependent epimerase/dehydratase, putative [Ricinus communis]
gi|223541766|gb|EEF43314.1| NAD dependent
epimerase/dehydratase, putative [Ricinus communis]
Length = 584
Score = 88.6 bits (218), Expect(2) = 5e-17
Identities = 67/203 (33%), Positives = 92/203 (45%), Gaps = 6/203 (2%)
Frame = +3
Query: 6 SSIKEEEVKPVSSFTEDSSIKEIKKLKPLSPYSAYDDLKXXXXXXXXXXXXXNGHVIVVQ 185
+ + E +P S+ ++ + +PLSPY+AYDDLK N V
Sbjct: 345 TKVVPEASEPTSAIEKEPEQPKATVSRPLSPYTAYDDLKPPTSPIPIRPSGGNQSSSPVD 404
Query: 186 AVSDPAIAASQIDVSALTT---EARSSTVKLHDTRPLSPYFVYEDLKXXXXXXXXFSAPR 356
AV+ P +Q S L + E++ +TV+ PLSPY Y DLK S +
Sbjct: 405 AVAKPDTIDAQTSSSGLASAIPESKPATVEAKIAGPLSPYAAYPDLKPPTSPSPKPSGSK 464
Query: 357 RGFVVAAQPTNEAVPSSEYSNITEETPTKVFAEVPTPK-TSYLSPYPVYDDLKPPTSPSP 533
A T + S+ N AE P P+ +S SP+ VYDDLKPPTSPSP
Sbjct: 465 E-IPSGASSTEKVESSATGDNDVATITANNDAENPPPEFSSGHSPFLVYDDLKPPTSPSP 523
Query: 534 YAP--KVSPLSTSTIEAGSLSSP 596
AP V P ST+ + S+P
Sbjct: 524 IAPVGSVPPSSTNEVPKAGNSAP 546
Score = 25.8 bits (55), Expect(2) = 5e-17
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 611 YEDLKPPCSPVPS 649
YED+KPP SP P+
Sbjct: 570 YEDMKPPTSPSPA 582
>ref|XP_002284662.1| PREDICTED: protein TIC 62, chloroplastic isoform 1 [Vitis vinifera]
gi|297741413|emb|CBI32544.3| unnamed protein product
[Vitis vinifera]
Length = 529
Score = 70.5 bits (171), Expect(2) = 1e-12
Identities = 47/106 (44%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Frame = +3
Query: 282 PLSPYFVYEDLKXXXXXXXXFSAPRRGFVVAAQPTNEAVPSSEYS--NITEETPTKVFAE 455
PLSPY VYEDLK P A P + +P+ S ++ E T + E
Sbjct: 374 PLSPYIVYEDLKPPTSPTP---TPSTSSSTARAPDVDGIPAEPKSIPSVLEPLSTVLAKE 430
Query: 456 V---PTPKTSYLSPYPVYDDLKPPTSPSPYAPKVSPLSTSTIEAGS 584
KT LSPY VYDDLKPPTSPSP AP VS ST +E GS
Sbjct: 431 AIQEEAKKTRPLSPYIVYDDLKPPTSPSPSAPTVSLPSTLPMEGGS 476
Score = 28.9 bits (63), Expect(2) = 1e-12
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2
Query: 611 YEDLKPPCSPVPSPKQC 661
YEDLKPP S PSP QC
Sbjct: 515 YEDLKPPTS--PSPSQC 529
Score = 59.3 bits (142), Expect = 1e-06
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Frame = +3
Query: 81 LKPLSPYSAYDDLKXXXXXXXXXXXXXN-GHVIVVQAV-SDPAIAASQIDVSALTTEARS 254
+ PLSPY Y+DLK + V + ++P S ++ + +
Sbjct: 372 MSPLSPYIVYEDLKPPTSPTPTPSTSSSTARAPDVDGIPAEPKSIPSVLEPLSTVLAKEA 431
Query: 255 STVKLHDTRPLSPYFVYEDLKXXXXXXXXFSAPRRGFVVAAQPTNEAVPSSEYSNIT-EE 431
+ TRPLSPY VY+DLK SAP V+ T S+ NI+
Sbjct: 432 IQEEAKKTRPLSPYIVYDDLKPPTSPSP--SAP----TVSLPSTLPMEGGSKIDNISGNN 485
Query: 432 TPTKVFAEVPTPKTSY-------LSPYPVYDDLKPPTSPSP 533
T A++P + + LSP+ +Y+DLKPPTSPSP
Sbjct: 486 TAQPPAADIPKDEQHHVQAKPRPLSPFTMYEDLKPPTSPSP 526
>ref|XP_003631626.1| PREDICTED: protein TIC 62, chloroplastic isoform 2 [Vitis vinifera]
Length = 448
Score = 70.5 bits (171), Expect(2) = 1e-12
Identities = 47/106 (44%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Frame = +3
Query: 282 PLSPYFVYEDLKXXXXXXXXFSAPRRGFVVAAQPTNEAVPSSEYS--NITEETPTKVFAE 455
PLSPY VYEDLK P A P + +P+ S ++ E T + E
Sbjct: 293 PLSPYIVYEDLKPPTSPTP---TPSTSSSTARAPDVDGIPAEPKSIPSVLEPLSTVLAKE 349
Query: 456 V---PTPKTSYLSPYPVYDDLKPPTSPSPYAPKVSPLSTSTIEAGS 584
KT LSPY VYDDLKPPTSPSP AP VS ST +E GS
Sbjct: 350 AIQEEAKKTRPLSPYIVYDDLKPPTSPSPSAPTVSLPSTLPMEGGS 395
Score = 28.9 bits (63), Expect(2) = 1e-12
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2
Query: 611 YEDLKPPCSPVPSPKQC 661
YEDLKPP S PSP QC
Sbjct: 434 YEDLKPPTS--PSPSQC 448
Score = 59.3 bits (142), Expect = 1e-06
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Frame = +3
Query: 81 LKPLSPYSAYDDLKXXXXXXXXXXXXXN-GHVIVVQAV-SDPAIAASQIDVSALTTEARS 254
+ PLSPY Y+DLK + V + ++P S ++ + +
Sbjct: 291 MSPLSPYIVYEDLKPPTSPTPTPSTSSSTARAPDVDGIPAEPKSIPSVLEPLSTVLAKEA 350
Query: 255 STVKLHDTRPLSPYFVYEDLKXXXXXXXXFSAPRRGFVVAAQPTNEAVPSSEYSNIT-EE 431
+ TRPLSPY VY+DLK SAP V+ T S+ NI+
Sbjct: 351 IQEEAKKTRPLSPYIVYDDLKPPTSPSP--SAP----TVSLPSTLPMEGGSKIDNISGNN 404
Query: 432 TPTKVFAEVPTPKTSY-------LSPYPVYDDLKPPTSPSP 533
T A++P + + LSP+ +Y+DLKPPTSPSP
Sbjct: 405 TAQPPAADIPKDEQHHVQAKPRPLSPFTMYEDLKPPTSPSP 445
>ref|XP_002306080.1| predicted protein [Populus trichocarpa] gi|222849044|gb|EEE86591.1|
predicted protein [Populus trichocarpa]
Length = 517
Score = 77.4 bits (189), Expect = 5e-12
Identities = 60/172 (34%), Positives = 79/172 (45%), Gaps = 1/172 (0%)
Frame = +3
Query: 21 EEVKPVSSFTEDSSIKEIKKLKPLSPYSAYDDLKXXXXXXXXXXXXXNGHVIVVQAVSDP 200
E P S ++ + + +PLSPY+AYDDLK ++AVS P
Sbjct: 348 EPKAPSSPSQKEPAQAKAMVTRPLSPYTAYDDLKPPTSPTPIQPSSKKESAGPLEAVSKP 407
Query: 201 AIAASQIDVSALTTEARSSTVKLHDTRPLSPYFVYEDLKXXXXXXXXFSAPRRGFVVAAQ 380
A + + E + V+ TRPLSPY Y DLK +AP G V+
Sbjct: 408 ATQDTPPMPAPGVAETKPGPVETKTTRPLSPYAAYADLKPPTSPSP--TAPV-GSVIPTS 464
Query: 381 PTNEAVPSSEYSNITEETPTKVFAEVPT-PKTSYLSPYPVYDDLKPPTSPSP 533
TN AVP E N + + T PK LSPYP+Y+DLKPP SP+P
Sbjct: 465 STN-AVP--ETGNRAPPMAAAIDKQHHTEPKQKPLSPYPMYEDLKPPASPTP 513
Score = 62.4 bits (150), Expect(2) = 2e-10
Identities = 39/105 (37%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = +3
Query: 276 TRPLSPYFVYEDLKXXXXXXXXFSAPRRGFV----VAAQPTNEAVPSSEYSNITEETPTK 443
TRPLSPY Y+DLK + ++ ++P + P + E P
Sbjct: 368 TRPLSPYTAYDDLKPPTSPTPIQPSSKKESAGPLEAVSKPATQDTPPMPAPGVAETKP-- 425
Query: 444 VFAEVPTPKTSYLSPYPVYDDLKPPTSPSPYAPKVSPLSTSTIEA 578
V T T LSPY Y DLKPPTSPSP AP S + TS+ A
Sbjct: 426 --GPVETKTTRPLSPYAAYADLKPPTSPSPTAPVGSVIPTSSTNA 468
Score = 29.6 bits (65), Expect(2) = 2e-10
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +2
Query: 611 YEDLKPPCSPVPSPK 655
YEDLKPP SP PS K
Sbjct: 502 YEDLKPPASPTPSLK 516