BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028353
         (479 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528148.1| conserved hypothetical protein [Ricinus comm...    59   4e-07
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop...    58   9e-07
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ...    58   9e-07
gb|EEC68446.1| hypothetical protein OsI_36656 [Oryza sativa Indi...    56   3e-06
ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thalia...    56   3e-06

>ref|XP_002528148.1| conserved hypothetical protein [Ricinus communis]
           gi|223532446|gb|EEF34239.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 157

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
 Frame = -1

Query: 470 IWRSEVAAREQVFLWKLYMNILPIG*RLQKRISNKETRCVF*HRELETQEHMFFECE*AK 291
           +W   V  + +VF WKL  N LPIG  +  R+ + E  C F  R  ET +H+F  C  A 
Sbjct: 2   VWHLLVTNKIRVFFWKLLNNGLPIGEAINCRLLHVEGLC-FRCRASETLDHLFLHCPWAH 60

Query: 290 SLWVASPLGLRTEVNGRWTTR-SWL 219
           ++W  S L +RTE    W  R SWL
Sbjct: 61  TIWSRSTLSIRTESVALWKARNSWL 85


>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
          Length = 278

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 6/143 (4%)
 Frame = -1

Query: 470 IWRSEVAAREQVFLWKLYMNILPIG*RLQKRISNKETRCVF*HRELETQEHMFFECE*AK 291
           +W      +     W  + N L  G RL K  S     CVF   ELET++H+FF C  + 
Sbjct: 115 VWFPSSTPKYSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSS 174

Query: 290 SLWVASPLGLRTEVNGR----WT--TRSWLDEIMEWCNNKDDHIANLGVYACTLLHTIWD 129
            +W+A   GL   +NGR    W+  T   LD    +      H+  L      L+H++W 
Sbjct: 175 QIWIALAKGL---LNGRNVSSWSLITPHLLDSSQPYL-----HVFTLRYTFQALIHSLWR 226

Query: 128 NRNLEKFD*GAGAREPILAATSI 60
            RN      G    EP + A+ +
Sbjct: 227 ERN------GRRHGEPAIPASKL 243


>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 637

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 6/143 (4%)
 Frame = -1

Query: 470 IWRSEVAAREQVFLWKLYMNILPIG*RLQKRISNKETRCVF*HRELETQEHMFFECE*AK 291
           +W      +     W  + N L  G RL K  S     CVF   ELET++H+FF C  + 
Sbjct: 283 VWFPSSTPKYSFVTWLAFHNRLATGDRLYKWNSEARATCVFCDEELETRDHLFFSCPYSS 342

Query: 290 SLWVASPLGLRTEVNGR----WT--TRSWLDEIMEWCNNKDDHIANLGVYACTLLHTIWD 129
            +W+A   GL   +NGR    W+  T   LD    +      H+  L      L+H++W 
Sbjct: 343 QIWIALAKGL---LNGRNVSSWSLITPHLLDSSQPYL-----HVFTLRYTFQALIHSLWR 394

Query: 128 NRNLEKFD*GAGAREPILAATSI 60
            RN      G    EP + A+ +
Sbjct: 395 ERN------GRRHGEPAIPASKL 411


>gb|EEC68446.1| hypothetical protein OsI_36656 [Oryza sativa Indica Group]
          Length = 314

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
 Frame = -1

Query: 476 KRIWRSEVAAREQVFLWKLYMNILPIG*RLQKRISNKETRCVF*HRELETQEHMFFECE* 297
           KRIW   V  + ++F WK   N LP     +KR     + C     E E   H    C+ 
Sbjct: 57  KRIWACNVPQKVRIFAWKAISNSLPTMKNKKKRNLELLSTCCICGAEEEDVAHALCHCQQ 116

Query: 296 AKSLWVA--SPLGLRTEVNGRWTTRSWLDEIMEWCNNKDDHIANLGVYACTLLHTIWDNR 123
           A++LW A  S   +  +VN  W+   W+  ++E    ++D +  +      L+  IW NR
Sbjct: 117 ARNLWSAMYSARAISHDVNSAWSGTDWILNLLEVLPKEEDAMFLM------LMWRIWHNR 170

Query: 122 N 120
           N
Sbjct: 171 N 171


>ref|NP_189164.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 38/148 (25%), Positives = 70/148 (47%), Gaps = 1/148 (0%)
 Frame = -1

Query: 479 RKRIWRSEVAAREQVFLWKLYMNILPIG*RLQKRISNKETRCVF*HRELETQEHMFFECE 300
           + +IW+ + A + + FLWKL    L  G  L++R      +C    +E ET +H+FF+C 
Sbjct: 15  KAKIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCF 74

Query: 299 *AKSLWVASPLGLRTEVNGRWTTRSWLDEIMEWC-NNKDDHIANLGVYACTLLHTIWDNR 123
            A+ +W AS +  +       T  + ++ ++  C  N+   + NL ++   +L  +W +R
Sbjct: 75  YAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIW---ILWRLWKSR 131

Query: 122 NLEKFD*GAGAREPILAATSIQWQR*LK 39
           N           + +    SI WQ  L+
Sbjct: 132 N-----------QLVFQQKSISWQNTLQ 148