BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028343
         (793 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containi...   341   9e-92
emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]   341   1e-91
ref|XP_002325053.1| predicted protein [Populus trichocarpa] gi|2...   338   6e-91
ref|XP_002520160.1| pentatricopeptide repeat-containing protein,...   327   2e-87
gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]            325   7e-87

>ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  341 bits (875), Expect = 9e-92
 Identities = 160/260 (61%), Positives = 201/260 (77%)
 Frame = -2

Query: 780 YASRLLHHIHKPNSFIWNTLIRAYAWSVNGKEEAILIYRAMLEEGSVVPDKHTYPFVLKA 601
           YA R+ H I  PNSF+WN LIRA A S + K+ AI +Y  MLE+GSV+ DKHT+PFVLKA
Sbjct: 78  YAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKA 137

Query: 600 CAFLFALFEGKQMHCHVLKLGFEKDTYVNNSLVHFYVSCGHLDLGRKVFEKMSDTSLVSW 421
           CA+LFAL EG+Q+H  +LKLGF+ D Y+NNSLVHFY +C  LD  + VF++MS+ SLVSW
Sbjct: 138 CAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSW 197

Query: 420 NVMIDGYVQFGEFVTALRLFIQVQKLFEPDGFTMQSVICACTGLASLYLGMWAHVYVLRK 241
           NV+ID +V+FGEF  AL LF ++QK FEPDG+T+QS+  AC G+ SL LGMWAHV++L+K
Sbjct: 198 NVVIDAFVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKK 257

Query: 240 CELSVKNDVLVNNSVLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGFGMHGQVKEAL 61
            +    NDVL+N S++DMYCKCGSL+LA Q+F RM KRDVTSWN MILGF  HG+V  AL
Sbjct: 258 FDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAAL 317

Query: 60  DTFASMSNIDGLMPNSITFV 1
           + F  M   + LMPN+ITFV
Sbjct: 318 EYFGCMVRTEKLMPNAITFV 337


>emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
          Length = 583

 Score =  341 bits (874), Expect = 1e-91
 Identities = 159/260 (61%), Positives = 201/260 (77%)
 Frame = -2

Query: 780 YASRLLHHIHKPNSFIWNTLIRAYAWSVNGKEEAILIYRAMLEEGSVVPDKHTYPFVLKA 601
           YA R+ H I  PNSF+WN LIRA A S + K+ AI +Y  MLE+GSV+ DKHT+PFVLKA
Sbjct: 78  YAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKA 137

Query: 600 CAFLFALFEGKQMHCHVLKLGFEKDTYVNNSLVHFYVSCGHLDLGRKVFEKMSDTSLVSW 421
           CA+LFAL EG+Q+H  +LKLGF+ + Y+NNSLVHFY +C  LD  + VF++MS+ SLVSW
Sbjct: 138 CAYLFALSEGEQIHAQILKLGFDSBVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSW 197

Query: 420 NVMIDGYVQFGEFVTALRLFIQVQKLFEPDGFTMQSVICACTGLASLYLGMWAHVYVLRK 241
           NV+ID +V+FGEF  AL LF ++QK FEPDG+T+QS+  AC G+ SL LGMWAHV++L+K
Sbjct: 198 NVVIDAFVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKK 257

Query: 240 CELSVKNDVLVNNSVLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGFGMHGQVKEAL 61
            +    NDVL+N S++DMYCKCGSL+LA Q+F RM KRDVTSWN MILGF  HG+V  AL
Sbjct: 258 XDADRVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAAL 317

Query: 60  DTFASMSNIDGLMPNSITFV 1
           + F  M   + LMPN+ITFV
Sbjct: 318 EYFGCMVRTEKLMPNAITFV 337


>ref|XP_002325053.1| predicted protein [Populus trichocarpa] gi|222866487|gb|EEF03618.1|
           predicted protein [Populus trichocarpa]
          Length = 607

 Score =  338 bits (868), Expect = 6e-91
 Identities = 167/265 (63%), Positives = 199/265 (75%), Gaps = 4/265 (1%)
 Frame = -2

Query: 783 NYASRLLHHIHKPNSFIWNTLIRAYAWS--VNGKEEAILIYRAMLEEGSVVPDKHTYPFV 610
           NYA R+   +  PNSF+WN LIRA A S  V+ K EAIL+Y  ML+  S  PD HT+PFV
Sbjct: 73  NYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPDNHTFPFV 132

Query: 609 LKACAFLFALFEGKQMHCHVLKLGFEKDTYVNNSLVHFYVSCGHLDLGRKVFEKMSDTSL 430
           LKACA+LFALFEGKQ H H+LKLGF+ D Y+NNSL+HFY SCG L+  + VF+KM   SL
Sbjct: 133 LKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSL 192

Query: 429 VSWNVMIDGYVQFGEFVTALRLFIQV-QKLFEPDGFTMQSVICACTGLASLYLGMWAHVY 253
           VSWN MID +V FGEF TAL+LF+Q  Q+ FEPDG+T+QSVI AC GL +L LGMWAH +
Sbjct: 193 VSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAF 252

Query: 252 VLRKCELSVKND-VLVNNSVLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGFGMHGQ 76
           +LR C +SV  D VLVNNS+LDMYCKCGSLD+A Q+F  M K DVTSWN MILGF MHG+
Sbjct: 253 LLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGK 312

Query: 75  VKEALDTFASMSNIDGLMPNSITFV 1
            + AL+ F  M  I   +PNSITFV
Sbjct: 313 GELALECFERMIRISRFVPNSITFV 337



 Score = 84.0 bits (206), Expect = 4e-14
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
 Frame = -2

Query: 570 KQMHCHVLKLGFEKDT---YVNNSLVHFYVSCGHLDLGRKVFEKMSDTSLVSWNVMIDGY 400
           KQ+H   L+      +   ++ + ++HF  S   L+   +VF+++ + +   WN++I   
Sbjct: 39  KQIHALSLRSTLPNHSTTLFLYSRILHFS-SLHDLNYAYRVFDQVDNPNSFMWNILIRAC 97

Query: 399 VQF------GEFVTALRLFIQVQKLFEPDGFTMQSVICACTGLASLYLGMWAHVYVLRKC 238
            Q        E +      +Q    F PD  T   V+ AC  L +L+ G  AH ++L+  
Sbjct: 98  AQSQSVHLKREAILLYNTMLQRSSPF-PDNHTFPFVLKACAYLFALFEGKQAHAHLLK-- 154

Query: 237 ELSVKNDVLVNNSVLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGFGMHGQVKEALD 58
            L  ++DV +NNS++  Y  CGSL+ A  VF +M +R + SWN MI  F + G+ + AL 
Sbjct: 155 -LGFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETALQ 213

Query: 57  TF 52
            F
Sbjct: 214 LF 215


>ref|XP_002520160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540652|gb|EEF42215.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 330

 Score =  327 bits (838), Expect = 2e-87
 Identities = 154/247 (62%), Positives = 191/247 (77%)
 Frame = -2

Query: 783 NYASRLLHHIHKPNSFIWNTLIRAYAWSVNGKEEAILIYRAMLEEGSVVPDKHTYPFVLK 604
           +YA RL      PN+F+WNTLIRA A S + KE++ L+Y+ M+E+G+V+PDKHTYPFVLK
Sbjct: 80  DYAYRLFSKFDNPNAFMWNTLIRACARSYDRKEQSFLLYKRMIEQGAVLPDKHTYPFVLK 139

Query: 603 ACAFLFALFEGKQMHCHVLKLGFEKDTYVNNSLVHFYVSCGHLDLGRKVFEKMSDTSLVS 424
           ACA+LFAL EGKQ+H  +LK GFE D Y+NNSL+HFY SCG  +  + VF+KM   SLVS
Sbjct: 140 ACAYLFALNEGKQVHAQMLKHGFESDVYINNSLIHFYASCGCSEPAQYVFDKMPARSLVS 199

Query: 423 WNVMIDGYVQFGEFVTALRLFIQVQKLFEPDGFTMQSVICACTGLASLYLGMWAHVYVLR 244
           WN MID  VQFGEF  AL+LF+Q+Q+LFEPDG+TMQSV+ AC GL +L LGMW H Y+LR
Sbjct: 200 WNAMIDALVQFGEFDAALKLFVQLQELFEPDGYTMQSVLNACAGLCALSLGMWVHAYMLR 259

Query: 243 KCELSVKNDVLVNNSVLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGFGMHGQVKEA 64
           K ++ V  DVLV+N +LDMYCKCGSLD+A QVF RM KRD+TSWN MILGF MHG+ +  
Sbjct: 260 KFDVEVTLDVLVDNCLLDMYCKCGSLDIAMQVFERMHKRDITSWNSMILGFAMHGKAELT 319

Query: 63  LDTFASM 43
            + F  M
Sbjct: 320 FEYFDCM 326



 Score = 70.9 bits (172), Expect = 3e-10
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 11/198 (5%)
 Frame = -2

Query: 570 KQMHCHVLKLGFEKDT---YVNNSLVHFYVSCGHLDLGRKVFEKMSDTSLVSWNVMIDGY 400
           KQ+H   L+          ++ + ++HF  S   LD   ++F K  + +   WN +I   
Sbjct: 46  KQIHAQALRSTLPDSPHSLFLYSKILHFS-SFNDLDYAYRLFSKFDNPNAFMWNTLIRAC 104

Query: 399 VQFGEFVTALRLFIQVQKLFE-----PDGFTMQSVICACTGLASLYLGMWAHVYVLRKCE 235
            +   +    + F+  +++ E     PD  T   V+ AC  L +L  G   H  +L+   
Sbjct: 105 AR--SYDRKEQSFLLYKRMIEQGAVLPDKHTYPFVLKACAYLFALNEGKQVHAQMLKH-- 160

Query: 234 LSVKNDVLVNNSVLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGFGMHGQVKEALDT 55
              ++DV +NNS++  Y  CG  + A  VF +M  R + SWN MI      G+   AL  
Sbjct: 161 -GFESDVYINNSLIHFYASCGCSEPAQYVFDKMPARSLVSWNAMIDALVQFGEFDAALKL 219

Query: 54  FASMSNI---DGLMPNSI 10
           F  +  +   DG    S+
Sbjct: 220 FVQLQELFEPDGYTMQSV 237


>gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  325 bits (833), Expect = 7e-87
 Identities = 154/262 (58%), Positives = 196/262 (74%), Gaps = 1/262 (0%)
 Frame = -2

Query: 783 NYASRLLHHIHKPNSFIWNTLIRAYAWSVNGKEEAILIYRAMLEEGSVVPDKHTYPFVLK 604
           NYA R+   I   +SF+WNTLIRA A  V+ KEEA ++YR MLE G   PDKHT+PFVLK
Sbjct: 157 NYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLK 216

Query: 603 ACAFLFALFEGKQMHCHVLKLGFEKDTYVNNSLVHFYVSCGHLDLGRKVFEKMSDTSLVS 424
           ACA++F   EGKQ+HC ++K GF  D YVNN L+H Y SCG LDL RKVF++M + SLVS
Sbjct: 217 ACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVS 276

Query: 423 WNVMIDGYVQFGEFVTALRLFIQVQKLFEPDGFTMQSVICACTGLASLYLGMWAHVYVLR 244
           WN MID  V+FGE+ +AL+LF ++Q+ FEPDG+TMQSV+ AC GL SL LG WAH ++LR
Sbjct: 277 WNSMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLR 336

Query: 243 KCELSVKNDVLVNNSVLDMYCKCGSLDLAHQVFRRMSKRDVTSWNLMILGFGMHGQVKEA 64
           KC++ V  DVLV NS+++MYCKCGSL +A QVF+ M KRD+ SWN MILGF  HG+ +EA
Sbjct: 337 KCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEA 396

Query: 63  LDTFASM-SNIDGLMPNSITFV 1
           ++ F  M    + + PNS+TFV
Sbjct: 397 MNFFDRMVDKRENVRPNSVTFV 418