BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028318
         (658 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containi...   286   3e-75
emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]   286   3e-75
ref|XP_002519997.1| pentatricopeptide repeat-containing protein,...   278   9e-73
ref|XP_002309826.1| predicted protein [Populus trichocarpa] gi|2...   275   4e-72
ref|XP_002327945.1| predicted protein [Populus trichocarpa] gi|2...   265   4e-69

>ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
            chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  286 bits (731), Expect = 3e-75
 Identities = 144/219 (65%), Positives = 174/219 (79%)
 Frame = -2

Query: 657  EALALLDDLREKVPKSHDLIAEASIVLLCKDHEVDAAMEQYNNSKIFGLSKGSCSMYESL 478
            EA  LLD LRE    SH LI EA I++LCK H++  A+ +Y  ++ FGL  GS +MYESL
Sbjct: 623  EARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALREYGKARDFGLFCGSFTMYESL 682

Query: 477  IKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLVFIYCKIGFPETAHHLVDQAESLNF 298
            + CCE  E FAEASQ+++DM+F G+EPS+ LYRS+V  YCK+GFPETAH+L+DQAE    
Sbjct: 683  LLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGL 742

Query: 297  LQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYSTVDRKVWNALIHAYAASGRYEQAR 118
            L +D +I+  +IE YGKLKL Q+AESLVG LR K + VDRKVWNALIHAYAASG YE+AR
Sbjct: 743  LFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERAR 802

Query: 117  AVFNTMIRDGLSPTVDSVNGLMKALIVDERLDELYVVIQ 1
            A+FNTM+RDG SPTVDSVNGLM+ALIVD RLDELYVVIQ
Sbjct: 803  AIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQ 841



 Score = 72.0 bits (175), Expect = 9e-11
 Identities = 40/152 (26%), Positives = 77/152 (50%)
 Frame = -2

Query: 507  KGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLVFIYCKIGFPETAHH 328
            K   S++ S++K       F +  QVY  ++  G++P E  Y +L+ +YC+   PE    
Sbjct: 919  KPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLS 978

Query: 327  LVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYSTVDRKVWNALIHAY 148
            L+ +   +  L+     Y  +I  +GKL++ ++AE L   L  K   +DR  ++ ++  +
Sbjct: 979  LMHEMRRVG-LEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMF 1037

Query: 147  AASGRYEQARAVFNTMIRDGLSPTVDSVNGLM 52
              SG + +A  +   M   G+ PT+ +++ LM
Sbjct: 1038 RNSGNHSKAEKLLGVMKEAGVEPTIATMHLLM 1069


>emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  286 bits (731), Expect = 3e-75
 Identities = 144/219 (65%), Positives = 174/219 (79%)
 Frame = -2

Query: 657  EALALLDDLREKVPKSHDLIAEASIVLLCKDHEVDAAMEQYNNSKIFGLSKGSCSMYESL 478
            EA  LLD LRE    SH LI EA I++LCK H++  A+ +Y  ++ FGL  GS +MYESL
Sbjct: 655  EARELLDFLREHSSGSHQLINEALIIMLCKAHQLGDALREYGKARDFGLFCGSFTMYESL 714

Query: 477  IKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLVFIYCKIGFPETAHHLVDQAESLNF 298
            + CCE  E FAEASQ+++DM+F G+EPS+ LYRS+V  YCK+GFPETAH+L+DQAE    
Sbjct: 715  LLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQAEEKGL 774

Query: 297  LQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYSTVDRKVWNALIHAYAASGRYEQAR 118
            L +D +I+  +IE YGKLKL Q+AESLVG LR K + VDRKVWNALIHAYAASG YE+AR
Sbjct: 775  LFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGCYERAR 834

Query: 117  AVFNTMIRDGLSPTVDSVNGLMKALIVDERLDELYVVIQ 1
            A+FNTM+RDG SPTVDSVNGLM+ALIVD RLDELYVVIQ
Sbjct: 835  AIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQ 873



 Score = 72.0 bits (175), Expect = 9e-11
 Identities = 40/152 (26%), Positives = 77/152 (50%)
 Frame = -2

Query: 507  KGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLVFIYCKIGFPETAHH 328
            K   S++ S++K       F +  QVY  ++  G++P E  Y +L+ +YC+   PE    
Sbjct: 951  KPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLS 1010

Query: 327  LVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYSTVDRKVWNALIHAY 148
            L+ +   +  L+     Y  +I  +GKL++ ++AE L   L  K   +DR  ++ ++  +
Sbjct: 1011 LMHEMRRVG-LEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMF 1069

Query: 147  AASGRYEQARAVFNTMIRDGLSPTVDSVNGLM 52
              SG + +A  +   M   G+ PT+ +++ LM
Sbjct: 1070 RNSGNHSKAEKLLGVMKEAGVEPTIATMHLLM 1101


>ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223540761|gb|EEF42321.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1429

 Score =  278 bits (710), Expect = 9e-73
 Identities = 141/219 (64%), Positives = 177/219 (80%)
 Frame = -2

Query: 657  EALALLDDLREKVPKSHDLIAEASIVLLCKDHEVDAAMEQYNNSKIFGLSKGSCSMYESL 478
            EAL LL  L+  V KS+ L+AEASIV LCK  ++DAA+++YN+++ F    GSC+MYESL
Sbjct: 611  EALDLLQFLKGHVSKSNQLVAEASIVTLCKAKQLDAALKEYNDTREFDWFTGSCTMYESL 670

Query: 477  IKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLVFIYCKIGFPETAHHLVDQAESLNF 298
            I+CCE  E  AEASQ+++DM+F G++PS+SLYRS+V +YCK+GFPETAH+L+D AE    
Sbjct: 671  IQCCEENEFTAEASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLIDLAEIEGM 730

Query: 297  LQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYSTVDRKVWNALIHAYAASGRYEQAR 118
              +  +I V +IETYGKLKL Q+AESLVG LR + + VDRKVWNALI AYAASG YEQAR
Sbjct: 731  PFDKISIDVAVIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCYEQAR 790

Query: 117  AVFNTMIRDGLSPTVDSVNGLMKALIVDERLDELYVVIQ 1
            AVFNTM+RDG SPTVDS+NGL++ALIVD RL+ELYVV Q
Sbjct: 791  AVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQ 829



 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 47/178 (26%), Positives = 86/178 (48%)
 Frame = -2

Query: 585  IVLLCKDHEVDAAMEQYNNSKIFGLSKGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCG 406
            I LLCK   V          +  G  +   S++ S+++     + F +  Q+Y  +K  G
Sbjct: 882  IGLLCKGKRVRDVEAMVTEMEEAGF-RPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDG 940

Query: 405  MEPSESLYRSLVFIYCKIGFPETAHHLVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRA 226
            ++P E  Y +L+ +YC+   PE    L+ +   +  L+     Y  +I  +GK +L   A
Sbjct: 941  LQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIG-LEPKLDTYKSLIAAFGKQQLVVDA 999

Query: 225  ESLVGKLRLKYSTVDRKVWNALIHAYAASGRYEQARAVFNTMIRDGLSPTVDSVNGLM 52
            E L  +L  K S +DR  ++ ++  Y  SG + +A  + + M   G+ PT+ +++ LM
Sbjct: 1000 EELFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLM 1057


>ref|XP_002309826.1| predicted protein [Populus trichocarpa] gi|222852729|gb|EEE90276.1|
            predicted protein [Populus trichocarpa]
          Length = 1480

 Score =  275 bits (704), Expect = 4e-72
 Identities = 134/219 (61%), Positives = 178/219 (81%)
 Frame = -2

Query: 657  EALALLDDLREKVPKSHDLIAEASIVLLCKDHEVDAAMEQYNNSKIFGLSKGSCSMYESL 478
            EAL LL+ L+E  P+S  +I EA +V+LCK  ++DAA+++Y+N++  G + GS +M+ESL
Sbjct: 655  EALDLLEFLKEHSPRSSQMITEALVVMLCKAQQLDAALKEYSNNRELGFT-GSFTMFESL 713

Query: 477  IKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLVFIYCKIGFPETAHHLVDQAESLNF 298
            I+CC   E   EASQV++DM+FCG++ SESLY S+V +YCK+GFPETAHHL+D AES   
Sbjct: 714  IQCCLENELITEASQVFSDMRFCGIKASESLYESMVLLYCKMGFPETAHHLIDFAESDGI 773

Query: 297  LQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYSTVDRKVWNALIHAYAASGRYEQAR 118
            L N+ ++YV++IE YG+LKL Q+AES+ G LR +  TVDRKVWNALI AYAASG YE+AR
Sbjct: 774  LLNNISLYVNVIEAYGRLKLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERAR 833

Query: 117  AVFNTMIRDGLSPTVDSVNGLMKALIVDERLDELYVVIQ 1
            A+FNTM+RDG SPTVD++NGL++ALIVD RLDELYVV+Q
Sbjct: 834  AIFNTMMRDGPSPTVDTINGLLQALIVDGRLDELYVVVQ 872



 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 44/152 (28%), Positives = 81/152 (53%)
 Frame = -2

Query: 507  KGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLVFIYCKIGFPETAHH 328
            K   S++ S++K     E F +  QVY  +K  G+EP E  Y +L+ +YC+   PE    
Sbjct: 950  KPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFS 1009

Query: 327  LVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYSTVDRKVWNALIHAY 148
            L+ +      L+     Y  ++ ++GK +L ++AE L  +L+ K   +DR  ++ ++  Y
Sbjct: 1010 LMHEMRVAG-LEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIY 1068

Query: 147  AASGRYEQARAVFNTMIRDGLSPTVDSVNGLM 52
              SG + +A  +F+ M   G+ PT+ +++ LM
Sbjct: 1069 RNSGSHSKAERLFSMMKDAGVEPTIATMHLLM 1100


>ref|XP_002327945.1| predicted protein [Populus trichocarpa] gi|222837354|gb|EEE75733.1|
            predicted protein [Populus trichocarpa]
          Length = 1450

 Score =  265 bits (678), Expect = 4e-69
 Identities = 127/218 (58%), Positives = 175/218 (80%)
 Frame = -2

Query: 654  ALALLDDLREKVPKSHDLIAEASIVLLCKDHEVDAAMEQYNNSKIFGLSKGSCSMYESLI 475
            AL LL+ L+E  P+S  +I EA +V+LCK  ++D A+++Y+NS+  G + GS +M+E+LI
Sbjct: 658  ALDLLELLKEHTPRSSQMITEALVVMLCKAQQLDTALKEYSNSRELGFT-GSFTMFEALI 716

Query: 474  KCCEVTEHFAEASQVYTDMKFCGMEPSESLYRSLVFIYCKIGFPETAHHLVDQAESLNFL 295
            +CC   E F EASQV++DM+FCG++ SE LY+S++ +YCK+GFPETAHHL+D  E+   +
Sbjct: 717  QCCLENELFTEASQVFSDMRFCGIKASECLYQSMMLLYCKMGFPETAHHLIDLTETDGTV 776

Query: 294  QNDFTIYVDIIETYGKLKLCQRAESLVGKLRLKYSTVDRKVWNALIHAYAASGRYEQARA 115
             N+ ++YVD+IE YG+LKL Q+AES+ G +R    TV+RKVWNALI AYAASG YE+ARA
Sbjct: 777  LNNISVYVDVIEAYGRLKLWQKAESVAGNMRQSCITVNRKVWNALIEAYAASGCYERARA 836

Query: 114  VFNTMIRDGLSPTVDSVNGLMKALIVDERLDELYVVIQ 1
            VFNTM++DG SPTVDS+NGL++ALIVD RL+ELYVV+Q
Sbjct: 837  VFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQ 874



 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 46/176 (26%), Positives = 94/176 (53%)
 Frame = -2

Query: 579  LLCKDHEVDAAMEQYNNSKIFGLSKGSCSMYESLIKCCEVTEHFAEASQVYTDMKFCGME 400
            LLC+  +V       +  +  G  K   S++ S++K     + F + +Q+Y  +K  G+E
Sbjct: 929  LLCRGKQVRDVEAMLSEMEEAGF-KPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLE 987

Query: 399  PSESLYRSLVFIYCKIGFPETAHHLVDQAESLNFLQNDFTIYVDIIETYGKLKLCQRAES 220
            P E  Y  L+ +YC+   P+    L+D+  ++  L+     Y  ++ ++GK +L ++AE 
Sbjct: 988  PDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVG-LEPKLDTYKSLVASFGKQQLVEQAEE 1046

Query: 219  LVGKLRLKYSTVDRKVWNALIHAYAASGRYEQARAVFNTMIRDGLSPTVDSVNGLM 52
            L  +L+     +DR  ++ ++  Y  SG + +A+ +F+ M  +G+ PT+ +++ LM
Sbjct: 1047 LFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMHLLM 1102