BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028298
         (688 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t...   207   2e-51
emb|CAN69190.1| hypothetical protein VITISV_001578 [Vitis vinifera]   207   2e-51
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th...   207   2e-51
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha...   205   8e-51
emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]   201   9e-50

>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1109

 Score =  207 bits (526), Expect = 2e-51
 Identities = 97/161 (60%), Positives = 126/161 (78%), Gaps = 1/161 (0%)
 Frame = +2

Query: 14  FFSDHGVIHERSCVSTPQQNGVVERKHRYLLEVARALRFQAHLPLRFWGECILTAAYLIN 193
           +F   G+ HE SCV TP QNG VERKHR++L +ARALRFQ++LP++FWGECIL+AAYLIN
Sbjct: 427 YFLHKGITHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLIN 486

Query: 194 KMPSPILLGKSPHELLFKSIPSYSHLRVFGSLCYAHNSNIK-HKFDQRAKPGIFVGYPHG 370
           + PS +L GKSP+E+L+K+ P+YSHLRVFGSLCYAHN N K  KF  R++  +FVGYPHG
Sbjct: 487 RTPSMLLQGKSPYEMLYKTAPNYSHLRVFGSLCYAHNQNHKGDKFVARSRRCVFVGYPHG 546

Query: 371 QKGYRVFDIANKTIYVSRDVNFFEGIFPFRDVSKSTSTSPY 493
           QKG+R+FD+  +  +VSRDV F E  FP+  +S +  TS +
Sbjct: 547 QKGWRLFDLEEQKFFVSRDVIFQETEFPYSKMSCNRFTSSH 587


>emb|CAN69190.1| hypothetical protein VITISV_001578 [Vitis vinifera]
          Length = 1323

 Score =  207 bits (526), Expect = 2e-51
 Identities = 97/159 (61%), Positives = 121/159 (76%)
 Frame = +2

Query: 14  FFSDHGVIHERSCVSTPQQNGVVERKHRYLLEVARALRFQAHLPLRFWGECILTAAYLIN 193
           FF D+GVI + SCV TPQQNGVVERKHR++L+VARAL+F A +P +FWGEC LTA ++IN
Sbjct: 503 FFQDNGVIFQHSCVYTPQQNGVVERKHRHILQVARALKFHAQVPTQFWGECALTAVHIIN 562

Query: 194 KMPSPILLGKSPHELLFKSIPSYSHLRVFGSLCYAHNSNIKHKFDQRAKPGIFVGYPHGQ 373
           ++PSPIL  K+P ELL+   PSYSHLRVFG L YA N +  HKFD RA P IF+GYP GQ
Sbjct: 563 RLPSPILSFKTPFELLYSKPPSYSHLRVFGCLAYATNVHTSHKFDYRAMPSIFIGYPVGQ 622

Query: 374 KGYRVFDIANKTIYVSRDVNFFEGIFPFRDVSKSTSTSP 490
           K Y++FD++ K ++ SRDV F E IFP+  + K  ST P
Sbjct: 623 KAYKLFDLSTKKVFTSRDVKFHEDIFPYVSL-KPNSTLP 660


>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
           gi|7269049|emb|CAB79159.1| LTR retrotransposon like
           protein [Arabidopsis thaliana]
          Length = 1109

 Score =  207 bits (526), Expect = 2e-51
 Identities = 97/161 (60%), Positives = 125/161 (77%), Gaps = 1/161 (0%)
 Frame = +2

Query: 14  FFSDHGVIHERSCVSTPQQNGVVERKHRYLLEVARALRFQAHLPLRFWGECILTAAYLIN 193
           +F   G+ HE SCV TP QNG VERKHR++L +ARALRFQ++LP++FWGECIL+AAYLIN
Sbjct: 427 YFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLIN 486

Query: 194 KMPSPILLGKSPHELLFKSIPSYSHLRVFGSLCYAHNSNIK-HKFDQRAKPGIFVGYPHG 370
           + PS +L GKSP+E+L+K+ P YSHLRVFGSLCYAHN N K  KF  R++  +FVGYPHG
Sbjct: 487 RTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHG 546

Query: 371 QKGYRVFDIANKTIYVSRDVNFFEGIFPFRDVSKSTSTSPY 493
           QKG+R+FD+  +  +VSRDV F E  FP+  +S +  TS +
Sbjct: 547 QKGWRLFDLEEQKFFVSRDVIFQETEFPYSKMSCNRFTSSH 587


>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score =  205 bits (521), Expect = 8e-51
 Identities = 95/153 (62%), Positives = 121/153 (79%), Gaps = 1/153 (0%)
 Frame = +2

Query: 14   FFSDHGVIHERSCVSTPQQNGVVERKHRYLLEVARALRFQAHLPLRFWGECILTAAYLIN 193
            +F   G+ HE SCV TP QNG VERKHR++L +ARALRFQ++LP++FWGECIL+AAYLIN
Sbjct: 651  YFLHKGIAHETSCVGTPHQNGRVERKHRHILNIARALRFQSYLPIQFWGECILSAAYLIN 710

Query: 194  KMPSPILLGKSPHELLFKSIPSYSHLRVFGSLCYAHNSNIK-HKFDQRAKPGIFVGYPHG 370
            + PS +L GKSP+E+L+K+ P YSHLRVFGSLCYAHN N K  KF  R++  +FVGYPHG
Sbjct: 711  RTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKGDKFAARSRRCVFVGYPHG 770

Query: 371  QKGYRVFDIANKTIYVSRDVNFFEGIFPFRDVS 469
            QKG+R+FD+  +  +VSRDV F E  FP+  +S
Sbjct: 771  QKGWRLFDLEEQKFFVSRDVIFQETEFPYSKMS 803


>emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]
          Length = 1523

 Score =  201 bits (512), Expect = 9e-50
 Identities = 91/163 (55%), Positives = 122/163 (74%), Gaps = 1/163 (0%)
 Frame = +2

Query: 2    RHARFFSDHGVIHERSCVSTPQQNGVVERKHRYLLEVARALRFQAHLPLRFWGECILTAA 181
            +H +F+S  G++H+ SC++TPQQNGVVERKHR+LL VARAL FQ+HLP  FWG+ ILTAA
Sbjct: 660  KHTQFYSSRGILHQTSCINTPQQNGVVERKHRHLLNVARALLFQSHLPKPFWGDAILTAA 719

Query: 182  YLINKMPSPILLGKSPHELLFKSIPSYSHLRVFGSLCYAHNSNIK-HKFDQRAKPGIFVG 358
            YLIN+ P+P+L GK+P E LF   P+YSHLRVFG  C+     ++  KFD R+   +F+G
Sbjct: 720  YLINRTPTPLLQGKTPFEKLFHKSPNYSHLRVFGCRCFVSTHPLRPSKFDPRSIESVFIG 779

Query: 359  YPHGQKGYRVFDIANKTIYVSRDVNFFEGIFPFRDVSKSTSTS 487
            YPHGQKGY+V+ + +K   +SRDV FFE  FP+++   +TS S
Sbjct: 780  YPHGQKGYKVYSLKDKKXLISRDVTFFETEFPYQNXLSTTSPS 822