BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028250
         (738 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514630.1| Cleavage stimulation factor 50 kDa subunit, ...   388   e-106
ref|XP_002265349.2| PREDICTED: cleavage stimulation factor subun...   366   2e-99
ref|XP_004157439.1| PREDICTED: LOW QUALITY PROTEIN: cleavage sti...   362   4e-98
emb|CBI15329.3| unnamed protein product [Vitis vinifera]              356   3e-96
ref|XP_004137447.1| PREDICTED: LOW QUALITY PROTEIN: cleavage sti...   344   1e-92

>ref|XP_002514630.1| Cleavage stimulation factor 50 kDa subunit, putative [Ricinus
           communis] gi|223546234|gb|EEF47736.1| Cleavage
           stimulation factor 50 kDa subunit, putative [Ricinus
           communis]
          Length = 435

 Score =  388 bits (997), Expect = e-106
 Identities = 190/246 (77%), Positives = 212/246 (86%)
 Frame = +1

Query: 1   LQDGKLHRQVNSLIVAHLRDNNLSQXXXXXXXXXXXPLNFEAPTNKLLELVAKGLAVERD 180
           LQDGKLHRQ+NSLIVAHLRD++L+Q           PLN EAP NKLLELVAKGLA E+D
Sbjct: 10  LQDGKLHRQLNSLIVAHLRDSSLTQAIASATMT---PLNVEAPPNKLLELVAKGLAAEKD 66

Query: 181 EASRGLSPATMLDSGMVIPAGYGSLPPPKATAVDFSVVQDMKGSSKTFSKHETRHVSEHK 360
           E  RG++   M D G ++PA YGS+P P+A +VDFS  QD KGSSK FSKHETRH+SEHK
Sbjct: 67  EMLRGVTSTAMYDLGTLLPAAYGSIPAPRAASVDFSAAQDTKGSSKNFSKHETRHLSEHK 126

Query: 361 NVARCARFSPDGRYVATGSADTSIKLFEVSKIKQMMLPDTREGPVRPVIRTFYDHLQPVN 540
           N+ARCARFSPDGR+VATGSADTSIKLFE+SKIKQMML D R+GPVRPVIRTFYDH+QP+N
Sbjct: 127 NIARCARFSPDGRFVATGSADTSIKLFEISKIKQMMLSDARDGPVRPVIRTFYDHIQPIN 186

Query: 541 DLDFHPQSPVLISGAKDHTIKFFDFSKAVAKKAFRVIQDTHNVRSVSFHPSGEYLLAGTD 720
           DLDFHPQ+ VLISGAKDHTIKFFDFSKA AKKAFRVIQDTHNVRSVSFHPSG++LLAGTD
Sbjct: 187 DLDFHPQNTVLISGAKDHTIKFFDFSKATAKKAFRVIQDTHNVRSVSFHPSGDFLLAGTD 246

Query: 721 HHIAHL 738
           H IAHL
Sbjct: 247 HQIAHL 252


>ref|XP_002265349.2| PREDICTED: cleavage stimulation factor subunit 1-like [Vitis
           vinifera]
          Length = 440

 Score =  366 bits (940), Expect = 2e-99
 Identities = 183/249 (73%), Positives = 208/249 (83%), Gaps = 3/249 (1%)
 Frame = +1

Query: 1   LQDGKLHRQVNSLIVAHLRDNNLSQXXXXXXXXXXXPLNFEAPTNKLLELVAKGLAVERD 180
           LQ+GKL+RQ+N+LIVA+LRD NL+Q           PLN + P  KL++LVAKGLAVE+D
Sbjct: 9   LQEGKLYRQINALIVAYLRDYNLTQAASAVASATMTPLNVDTPPYKLIDLVAKGLAVEKD 68

Query: 181 EASRGLSP-ATMLDSGMVIPAGYGSLPPPKATAVDFSVVQDMKGSSKTFSKHETRHVSEH 357
           E  +G  P A  LDSG V+P  YGS+P P+  AVDF  V D KGSSK+F KHETRHVSEH
Sbjct: 69  EMLKGGVPSAAFLDSGAVMPVTYGSIPAPRTVAVDFGAVHDTKGSSKSFPKHETRHVSEH 128

Query: 358 KNVARCARFSPDGRYVATGSADTSIKLFEVSKIKQMMLPD--TREGPVRPVIRTFYDHLQ 531
           KN+ARCARFS DGR+VATGSAD SIKLFE+SKIKQMMLPD  TR+GPVRPVIRTFYDH+Q
Sbjct: 129 KNLARCARFSLDGRFVATGSADMSIKLFEISKIKQMMLPDANTRDGPVRPVIRTFYDHIQ 188

Query: 532 PVNDLDFHPQSPVLISGAKDHTIKFFDFSKAVAKKAFRVIQDTHNVRSVSFHPSGEYLLA 711
           P+NDLDFHPQS VLISGAKDHTIKFFDFSK VAK+AFRVIQDTHNVRSVSFHPSG++LLA
Sbjct: 189 PINDLDFHPQSTVLISGAKDHTIKFFDFSKTVAKRAFRVIQDTHNVRSVSFHPSGDFLLA 248

Query: 712 GTDHHIAHL 738
           GTDH +AHL
Sbjct: 249 GTDHPVAHL 257


>ref|XP_004157439.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
           1-like [Cucumis sativus]
          Length = 437

 Score =  362 bits (929), Expect = 4e-98
 Identities = 175/246 (71%), Positives = 201/246 (81%)
 Frame = +1

Query: 1   LQDGKLHRQVNSLIVAHLRDNNLSQXXXXXXXXXXXPLNFEAPTNKLLELVAKGLAVERD 180
           LQDG+L+RQVNSLIVAHLRD+NL+Q           PLN + P  KL+ELVAKGLAVE+D
Sbjct: 9   LQDGQLYRQVNSLIVAHLRDHNLTQAASAAASATMTPLNVDVPPKKLMELVAKGLAVEKD 68

Query: 181 EASRGLSPATMLDSGMVIPAGYGSLPPPKATAVDFSVVQDMKGSSKTFSKHETRHVSEHK 360
           E  RG   + + + G  +P  +GS  P + +A+DFS  QD KGSSK F KHETRH+SEHK
Sbjct: 69  ETLRGSPASALYEFGSSMPTTFGSAQPSRPSAIDFSTTQDTKGSSKNFPKHETRHLSEHK 128

Query: 361 NVARCARFSPDGRYVATGSADTSIKLFEVSKIKQMMLPDTREGPVRPVIRTFYDHLQPVN 540
           NVARCARFS DGR+VATGSAD SIKLFEV+KIKQMMLPD ++GPVRPVIRTFYDH+QP+N
Sbjct: 129 NVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPIN 188

Query: 541 DLDFHPQSPVLISGAKDHTIKFFDFSKAVAKKAFRVIQDTHNVRSVSFHPSGEYLLAGTD 720
           DLDFHPQ+ VL+SGAKDHTIKFFDFSK  AKKAFRVIQDTHNVRS+S HPSG+YLLAGTD
Sbjct: 189 DLDFHPQNTVLVSGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTD 248

Query: 721 HHIAHL 738
           H I HL
Sbjct: 249 HQIPHL 254


>emb|CBI15329.3| unnamed protein product [Vitis vinifera]
          Length = 484

 Score =  356 bits (913), Expect = 3e-96
 Identities = 181/249 (72%), Positives = 206/249 (82%), Gaps = 3/249 (1%)
 Frame = +1

Query: 1   LQDGKLHRQVNSLIVAHLRDNNLSQXXXXXXXXXXXPLNFEAPTNKLLELVAKGLAVERD 180
           LQ+GKL+RQ+N+LIVA+LRD NL+Q           PLN + P  KL++LVAKGLAVE+D
Sbjct: 54  LQEGKLYRQINALIVAYLRDYNLTQAASAVASATMTPLNVDTPPYKLIDLVAKGLAVEKD 113

Query: 181 EASRGLSP-ATMLDSGMVIPAGYGSLPPPKATAVDFSVVQDMKGSSKTFSKHETRHVSEH 357
           E  +G  P A  LDSG V+P  YGS+P P+ T  D   V D KGSSK+F KHETRHVSEH
Sbjct: 114 EMLKGGVPSAAFLDSGAVMPVTYGSIPAPR-TGYDRFAVHDTKGSSKSFPKHETRHVSEH 172

Query: 358 KNVARCARFSPDGRYVATGSADTSIKLFEVSKIKQMMLPD--TREGPVRPVIRTFYDHLQ 531
           KN+ARCARFS DGR+VATGSAD SIKLFE+SKIKQMMLPD  TR+GPVRPVIRTFYDH+Q
Sbjct: 173 KNLARCARFSLDGRFVATGSADMSIKLFEISKIKQMMLPDANTRDGPVRPVIRTFYDHIQ 232

Query: 532 PVNDLDFHPQSPVLISGAKDHTIKFFDFSKAVAKKAFRVIQDTHNVRSVSFHPSGEYLLA 711
           P+NDLDFHPQS VLISGAKDHTIKFFDFSK VAK+AFRVIQDTHNVRSVSFHPSG++LLA
Sbjct: 233 PINDLDFHPQSTVLISGAKDHTIKFFDFSKTVAKRAFRVIQDTHNVRSVSFHPSGDFLLA 292

Query: 712 GTDHHIAHL 738
           GTDH +AHL
Sbjct: 293 GTDHPVAHL 301


>ref|XP_004137447.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
           1-like [Cucumis sativus]
          Length = 435

 Score =  344 bits (883), Expect = 1e-92
 Identities = 168/246 (68%), Positives = 196/246 (79%)
 Frame = +1

Query: 1   LQDGKLHRQVNSLIVAHLRDNNLSQXXXXXXXXXXXPLNFEAPTNKLLELVAKGLAVERD 180
           LQDG+L+RQVNSLIVAHLRD+NL+Q           PLN + P  KL+ELVAKGLAVE+D
Sbjct: 9   LQDGQLYRQVNSLIVAHLRDHNLTQAASAAASATMTPLNVDVPPKKLMELVAKGLAVEKD 68

Query: 181 EASRGLSPATMLDSGMVIPAGYGSLPPPKATAVDFSVVQDMKGSSKTFSKHETRHVSEHK 360
           E  RG   + + + G  +P  +GS  P + +A+DFS  QD KGSSK F KHETRH+SEHK
Sbjct: 69  ETLRGSPASALYEFGSSMPTTFGSAQPSRPSAIDFSTTQDTKGSSKNFPKHETRHLSEHK 128

Query: 361 NVARCARFSPDGRYVATGSADTSIKLFEVSKIKQMMLPDTREGPVRPVIRTFYDHLQPVN 540
           NVARCARFS DGR+VATGSAD SIKLFEV  +  + +PD ++GPVRPVIRTFYDH+QP+N
Sbjct: 129 NVARCARFSADGRFVATGSADMSIKLFEV--LIXLTIPDAKDGPVRPVIRTFYDHIQPIN 186

Query: 541 DLDFHPQSPVLISGAKDHTIKFFDFSKAVAKKAFRVIQDTHNVRSVSFHPSGEYLLAGTD 720
           DLDFHPQ+ VL+SGAKDHTIKFFDFSK  AKKAFRVIQDTHNVRS+S HPSG+YLLAGTD
Sbjct: 187 DLDFHPQNTVLVSGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTD 246

Query: 721 HHIAHL 738
           H I HL
Sbjct: 247 HQIPHL 252