BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028160
         (894 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521673.1| pentatricopeptide repeat-containing protein,...   261   2e-67
ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|2...   246   7e-63
emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]   241   2e-61
ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containi...   240   4e-61
ref|XP_004146072.1| PREDICTED: pentatricopeptide repeat-containi...   233   6e-59

>ref|XP_002521673.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539064|gb|EEF40660.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 341

 Score =  261 bits (666), Expect = 2e-67
 Identities = 131/209 (62%), Positives = 160/209 (76%)
 Frame = -2

Query: 893 IDTCCLNILIKGLCESDKLDAAFALLDEFPTLHCEPNVRTYSTLMNFLCKHSRVDEAFEL 714
           ID CCLNILIKGLCE+  L+AAF +LDEFP   C+PNVRT+STLM++LC    V++AF L
Sbjct: 136 IDACCLNILIKGLCENGDLEAAFYVLDEFPKQRCKPNVRTFSTLMHYLCAKGEVNQAFGL 195

Query: 713 CERMEQAGVDPDTITFNTLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLD 534
            +RME  G++ DTITFN LISGL K+GR+ EG+ELL KM+LKGCEPN GSYQ VLYGLLD
Sbjct: 196 LDRMENEGIEVDTITFNILISGLRKRGRIEEGMELLVKMKLKGCEPNAGSYQEVLYGLLD 255

Query: 533 SKKFLEAKCLMDKMISMGVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGM 354
           + KF EAK  MD+M+  G  PSF SYK +I GLC E L+G+VD VLK+ML+QGFVP+MGM
Sbjct: 256 AGKFSEAKDFMDRMVCEGNGPSFVSYKKLIDGLCKEKLIGEVDCVLKQMLKQGFVPKMGM 315

Query: 353 WKKILESMFSEQIISTSVSQCQFSELAKG 267
           WK I+ SM SE    TS+    FS++  G
Sbjct: 316 WKHIVGSMLSESGDCTSIC---FSQVIGG 341



 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 40/153 (26%), Positives = 79/153 (51%)
 Frame = -2

Query: 797 HCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFNTLISGLCKQGRVAEG 618
           +C P+V+T++ ++N L      D   E+ E+    GV+ D    N LI GLC+ G +   
Sbjct: 98  NCWPDVKTFNLVLNLLVSARIFDVVHEIYEKAPILGVEIDACCLNILIKGLCENGDLEAA 157

Query: 617 VELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISMGVLPSFSSYKLVIHG 438
             +LD+   + C+PN  ++  +++ L    +  +A  L+D+M + G+     ++ ++I G
Sbjct: 158 FYVLDEFPKQRCKPNVRTFSTLMHYLCAKGEVNQAFGLLDRMENEGIEVDTITFNILISG 217

Query: 437 LCNENLLGDVDLVLKKMLRQGFVPRMGMWKKIL 339
           L     + +   +L KM  +G  P  G ++++L
Sbjct: 218 LRKRGRIEEGMELLVKMKLKGCEPNAGSYQEVL 250


>ref|XP_002298921.1| predicted protein [Populus trichocarpa] gi|222846179|gb|EEE83726.1|
           predicted protein [Populus trichocarpa]
          Length = 326

 Score =  246 bits (627), Expect = 7e-63
 Identities = 119/178 (66%), Positives = 143/178 (80%)
 Frame = -2

Query: 893 IDTCCLNILIKGLCESDKLDAAFALLDEFPTLHCEPNVRTYSTLMNFLCKHSRVDEAFEL 714
           ID C LNILIKGLCE+  L+AAF +LDEFP   CEPNVRT+STLM+ LCK  +VDEAF L
Sbjct: 149 IDVCSLNILIKGLCENGDLEAAFNVLDEFPKQRCEPNVRTFSTLMHGLCKKGKVDEAFGL 208

Query: 713 CERMEQAGVDPDTITFNTLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLD 534
            ERME+ G+D DTITFN LISGL KQG+V EG+ELL++M +KGCEPN GSYQ +LYGLLD
Sbjct: 209 LERMEKEGIDADTITFNILISGLRKQGKVVEGLELLERMNIKGCEPNAGSYQEILYGLLD 268

Query: 533 SKKFLEAKCLMDKMISMGVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRM 360
           ++K++E K  M +MI  GV PSF SYK ++HGLC E LL D+D VLK+M RQGFVP+M
Sbjct: 269 AEKYVEGKEFMVRMIGQGVDPSFVSYKKLVHGLCKERLLRDLDWVLKQMARQGFVPKM 326



 Score = 76.3 bits (186), Expect = 9e-12
 Identities = 41/160 (25%), Positives = 83/160 (51%)
 Frame = -2

Query: 797 HCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFNTLISGLCKQGRVAEG 618
           +C PNV++++ ++N L      D   E+  +    G++ D  + N LI GLC+ G +   
Sbjct: 111 NCWPNVKSFNLVLNLLVSAKVFDVVHEVYLQAPMLGIEIDVCSLNILIKGLCENGDLEAA 170

Query: 617 VELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISMGVLPSFSSYKLVIHG 438
             +LD+   + CEPN  ++  +++GL    K  EA  L+++M   G+     ++ ++I G
Sbjct: 171 FNVLDEFPKQRCEPNVRTFSTLMHGLCKKGKVDEAFGLLERMEKEGIDADTITFNILISG 230

Query: 437 LCNENLLGDVDLVLKKMLRQGFVPRMGMWKKILESMFSEQ 318
           L  +  + +   +L++M  +G  P  G +++IL  +   +
Sbjct: 231 LRKQGKVVEGLELLERMNIKGCEPNAGSYQEILYGLLDAE 270


>emb|CAN60667.1| hypothetical protein VITISV_028261 [Vitis vinifera]
          Length = 393

 Score =  241 bits (615), Expect = 2e-61
 Identities = 117/200 (58%), Positives = 149/200 (74%)
 Frame = -2

Query: 893 IDTCCLNILIKGLCESDKLDAAFALLDEFPTLHCEPNVRTYSTLMNFLCKHSRVDEAFEL 714
           ID CCLNIL+KGLC S  +DAA  LLDE+P   C PNVRT+STLM+ LC+  RV+ A  L
Sbjct: 190 IDACCLNILVKGLCRSGNVDAACELLDEYPKQRCRPNVRTFSTLMHGLCESGRVEGALGL 249

Query: 713 CERMEQAGVDPDTITFNTLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLD 534
            ERME+ GV PDT+ FN LISGL K+GRV EG+ELL +M+LKGC PN GSYQ VLYG+LD
Sbjct: 250 LERMEREGVYPDTVVFNILISGLRKRGRVEEGMELLGRMKLKGCYPNAGSYQEVLYGVLD 309

Query: 533 SKKFLEAKCLMDKMISMGVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGM 354
           + +F +AK  M +MI  GV PSF SYK+VI+GLC ENL+ DV  +LK+M+ QGFVP   M
Sbjct: 310 TGRFGKAKEFMCQMIDEGVSPSFVSYKMVIYGLCKENLVADVVWILKQMVEQGFVPERWM 369

Query: 353 WKKILESMFSEQIISTSVSQ 294
           W++IL++MF   +  + + +
Sbjct: 370 WRRILQTMFPRNVSQSEIME 389


>ref|XP_002267684.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
           mitochondrial-like [Vitis vinifera]
          Length = 393

 Score =  240 bits (612), Expect = 4e-61
 Identities = 116/200 (58%), Positives = 149/200 (74%)
 Frame = -2

Query: 893 IDTCCLNILIKGLCESDKLDAAFALLDEFPTLHCEPNVRTYSTLMNFLCKHSRVDEAFEL 714
           ID CCLNIL+KGLC S  +DAA  LLDE+P   C PNVRT+STLM+ LC+  RV+ A  L
Sbjct: 190 IDACCLNILVKGLCRSGNVDAACELLDEYPKQRCRPNVRTFSTLMHGLCESGRVEGALGL 249

Query: 713 CERMEQAGVDPDTITFNTLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLD 534
            ERME+ GV PDT+ FN LISGL K+GRV EG+ELL +M+LKGC PN GSYQ VLYG+LD
Sbjct: 250 LERMEREGVYPDTVVFNILISGLRKRGRVEEGMELLGRMKLKGCYPNAGSYQEVLYGVLD 309

Query: 533 SKKFLEAKCLMDKMISMGVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGM 354
           + +F +AK  M +MI  GV PSF SYK++I+GLC ENL+ DV  +LK+M+ QGFVP   M
Sbjct: 310 TGRFGKAKEFMCQMIDEGVSPSFVSYKMMIYGLCKENLVADVVWILKQMVEQGFVPERWM 369

Query: 353 WKKILESMFSEQIISTSVSQ 294
           W++IL++MF   +  + + +
Sbjct: 370 WRRILQTMFPRNVSQSEIME 389


>ref|XP_004146072.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
           mitochondrial-like [Cucumis sativus]
           gi|449503658|ref|XP_004162112.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g14580,
           mitochondrial-like [Cucumis sativus]
          Length = 411

 Score =  233 bits (593), Expect = 6e-59
 Identities = 114/190 (60%), Positives = 142/190 (74%)
 Frame = -2

Query: 893 IDTCCLNILIKGLCESDKLDAAFALLDEFPTLHCEPNVRTYSTLMNFLCKHSRVDEAFEL 714
           ID CCLNIL+KGLC+S  LDAA  +LDEFP   C PNVRT+STL++ LC++  +  A EL
Sbjct: 196 IDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRTFSTLLHGLCENGELGRALEL 255

Query: 713 CERMEQAGVDPDTITFNTLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLD 534
             +ME  GV PDTITFN LISGL K+ R+ E +ELL +M+LKGC PN G+YQ VLYGLLD
Sbjct: 256 FCKMENEGVCPDTITFNILISGLRKKKRIEEAIELLGRMKLKGCYPNAGTYQEVLYGLLD 315

Query: 533 SKKFLEAKCLMDKMISMGVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGM 354
           + KF+EA+  M +MIS G+ PSF SYK ++ GLC + L  DVD VLK+M+ QGFVP++GM
Sbjct: 316 TGKFIEARDCMHRMISEGMDPSFVSYKKLLSGLCKKKLTEDVDWVLKQMVMQGFVPKVGM 375

Query: 353 WKKILESMFS 324
           WK IL  M S
Sbjct: 376 WKVILRCMLS 385



 Score = 84.3 bits (207), Expect = 3e-14
 Identities = 44/168 (26%), Positives = 88/168 (52%)
 Frame = -2

Query: 842 KLDAAFALLDEFPTLHCEPNVRTYSTLMNFLCKHSRVDEAFELCERMEQAGVDPDTITFN 663
           +L+ A   L + P  +C P+V+T++ ++N L      D   E+     + G++ D    N
Sbjct: 143 RLNKAIDTLFDMPNYNCWPSVKTFNFVLNLLVSAKMFDVVHEVYMGAPKLGIEIDACCLN 202

Query: 662 TLISGLCKQGRVAEGVELLDKMRLKGCEPNPGSYQAVLYGLLDSKKFLEAKCLMDKMISM 483
            L+ GLC+ G +   +++LD+   + C PN  ++  +L+GL ++ +   A  L  KM + 
Sbjct: 203 ILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRTFSTLLHGLCENGELGRALELFCKMENE 262

Query: 482 GVLPSFSSYKLVIHGLCNENLLGDVDLVLKKMLRQGFVPRMGMWKKIL 339
           GV P   ++ ++I GL  +  + +   +L +M  +G  P  G ++++L
Sbjct: 263 GVCPDTITFNILISGLRKKKRIEEAIELLGRMKLKGCYPNAGTYQEVL 310