BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028135
         (343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   105   3e-21
ref|XP_002879469.1| pentatricopeptide repeat-containing protein ...   100   1e-19
ref|NP_180932.1| pentatricopeptide repeat-containing protein [Ar...   100   1e-19
ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containi...    94   1e-17
ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containi...    94   1e-17

>ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33760-like [Vitis vinifera]
          Length = 561

 Score =  105 bits (263), Expect = 3e-21
 Identities = 58/112 (51%), Positives = 70/112 (62%)
 Frame = -3

Query: 338 YKALLQAGSRIKPLKQVHTQIIXXXXXXXXXXXXXXXXXXXXXXSIHYTRQLFLSIPNPD 159
           Y+ LL AG R+KPL+QVH  +I                      SI YTRQLF SI NPD
Sbjct: 22  YQVLLHAGPRLKPLQQVHAHLIVSGSYRSRALLTKLLTLACTAGSILYTRQLFFSITNPD 81

Query: 158 SFLFNSIIKASTKFNSPFHAISYYKQMRVMGLHHSNFTFTAVIKACADLSAL 3
           SFLFN+IIKAS+KF     AI +Y++M    +  SN+TFTAVIKACAD+SAL
Sbjct: 82  SFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVIKACADISAL 133


>ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325308|gb|EFH55728.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 583

 Score =  100 bits (249), Expect = 1e-19
 Identities = 49/112 (43%), Positives = 70/112 (62%)
 Frame = -3

Query: 338 YKALLQAGSRIKPLKQVHTQIIXXXXXXXXXXXXXXXXXXXXXXSIHYTRQLFLSIPNPD 159
           Y+A+++AG R+K L+QVH  +I                      +I YT  LFLS+P PD
Sbjct: 12  YEAIVRAGPRVKQLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPD 71

Query: 158 SFLFNSIIKASTKFNSPFHAISYYKQMRVMGLHHSNFTFTAVIKACADLSAL 3
            FLFNS+IK+++K   P H ++YY++M    +  SN+TFT+VIK+CADLSAL
Sbjct: 72  DFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSAL 123


>ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75101013|sp|P93011.1|PP182_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g33760 gi|1707020|gb|AAC69141.1| hypothetical protein
           [Arabidopsis thaliana] gi|330253787|gb|AEC08881.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 583

 Score =  100 bits (249), Expect = 1e-19
 Identities = 49/112 (43%), Positives = 70/112 (62%)
 Frame = -3

Query: 338 YKALLQAGSRIKPLKQVHTQIIXXXXXXXXXXXXXXXXXXXXXXSIHYTRQLFLSIPNPD 159
           Y+A+++AG R+K L+QVH  +I                      +I YT  LFLS+P PD
Sbjct: 12  YEAIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPD 71

Query: 158 SFLFNSIIKASTKFNSPFHAISYYKQMRVMGLHHSNFTFTAVIKACADLSAL 3
            FLFNS+IK+++K   P H ++YY++M    +  SN+TFT+VIK+CADLSAL
Sbjct: 72  DFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSAL 123


>ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 48/112 (42%), Positives = 69/112 (61%)
 Frame = -3

Query: 338 YKALLQAGSRIKPLKQVHTQIIXXXXXXXXXXXXXXXXXXXXXXSIHYTRQLFLSIPNPD 159
           ++ALL++G R++ L+QVH  II                      SI Y R+LF ++PNPD
Sbjct: 94  HEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPD 153

Query: 158 SFLFNSIIKASTKFNSPFHAISYYKQMRVMGLHHSNFTFTAVIKACADLSAL 3
           SFLF+S++K ++KF      + +Y++M   G   SN+TFT+VIKACADLSAL
Sbjct: 154 SFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSAL 205


>ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 48/112 (42%), Positives = 69/112 (61%)
 Frame = -3

Query: 338 YKALLQAGSRIKPLKQVHTQIIXXXXXXXXXXXXXXXXXXXXXXSIHYTRQLFLSIPNPD 159
           ++ALL++G R++ L+QVH  II                      SI Y R+LF ++PNPD
Sbjct: 30  HEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPD 89

Query: 158 SFLFNSIIKASTKFNSPFHAISYYKQMRVMGLHHSNFTFTAVIKACADLSAL 3
           SFLF+S++K ++KF      + +Y++M   G   SN+TFT+VIKACADLSAL
Sbjct: 90  SFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSAL 141