BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028112
         (530 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324235.1| predicted protein [Populus trichocarpa] gi|2...   112   3e-23
ref|XP_002524455.1| pentatricopeptide repeat-containing protein,...   101   6e-20
ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containi...   100   1e-19
ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containi...   100   2e-19
ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   100   2e-19

>ref|XP_002324235.1| predicted protein [Populus trichocarpa] gi|222865669|gb|EEF02800.1|
           predicted protein [Populus trichocarpa]
          Length = 736

 Score =  112 bits (280), Expect = 3e-23
 Identities = 59/166 (35%), Positives = 90/166 (54%)
 Frame = -3

Query: 498 NPILPLIQNIQTQQLDFKILHAHTITSGLFHDPFTSSRLVEFCFNLKHANLTYGQLIFKS 319
           +P L L+ N +T Q   K +H+  I +GL +  F  S+L+EFC    H +L+Y   +FK+
Sbjct: 29  HPSLTLLSNCKTLQT-LKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKT 87

Query: 318 IRNPDLYTWNAVMLGYIKLNLPILSISHYGVMLERGVKPNIYTFALVIKACIVNTSGENL 139
           IRNP+   WN ++ G      P L++ +Y  M+  G +PN YTF  + K+C         
Sbjct: 88  IRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSC-------TK 140

Query: 138 VEGGKLGRVIHGQVFKNGVEENVIVRNSIMKMYCNMGCLIEARLLF 1
           + G   G+ +H  V K G+E N  V  S++ MY   G L+ ARL+F
Sbjct: 141 IRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVF 186


>ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536243|gb|EEF37895.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 486

 Score =  101 bits (252), Expect = 6e-20
 Identities = 57/164 (34%), Positives = 88/164 (53%)
 Frame = -3

Query: 492 ILPLIQNIQTQQLDFKILHAHTITSGLFHDPFTSSRLVEFCFNLKHANLTYGQLIFKSIR 313
           +L   +N++T     K +H+  I +GL +  F  S+L+EFC    + +L+Y  L+FKSI 
Sbjct: 30  LLSTCKNLKT----LKQIHSQVIKTGLHNTHFALSKLIEFCVISPYGDLSYALLLFKSIG 85

Query: 312 NPDLYTWNAVMLGYIKLNLPILSISHYGVMLERGVKPNIYTFALVIKACIVNTSGENLVE 133
            P+   WN ++ G      PIL+I +Y  M+  G  PN YT+  V+K+C   +S      
Sbjct: 86  KPNQIIWNNIIRGLSLSESPILAIQYYVDMISSGFTPNTYTYPFVLKSCARISSTHE--- 142

Query: 132 GGKLGRVIHGQVFKNGVEENVIVRNSIMKMYCNMGCLIEARLLF 1
               G+ IHGQ+ K G + +  V  S++ MY   G L  ARL+F
Sbjct: 143 ----GKQIHGQILKLGFDNDAFVHTSLITMYVQNGELGNARLVF 182


>ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  100 bits (249), Expect = 1e-19
 Identities = 53/155 (34%), Positives = 84/155 (54%)
 Frame = -3

Query: 465 TQQLDFKILHAHTITSGLFHDPFTSSRLVEFCFNLKHANLTYGQLIFKSIRNPDLYTWNA 286
           T     K +HA  + + LF DPF++S++V FC      +L Y +L+F  I NP  +T N+
Sbjct: 51  TTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNS 110

Query: 285 VMLGYIKLNLPILSISHYGVMLERGVKPNIYTFALVIKACIVNTSGENLVEGGKLGRVIH 106
           ++ GY   NLP  +I  Y +M+ +G+ P+ +TF  + K+C V   G+ L          H
Sbjct: 111 IIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQL----------H 160

Query: 105 GQVFKNGVEENVIVRNSIMKMYCNMGCLIEARLLF 1
               K G   +  ++N++M MY N GCL+ AR +F
Sbjct: 161 CHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVF 195


>ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Glycine max]
          Length = 534

 Score =  100 bits (248), Expect = 2e-19
 Identities = 57/168 (33%), Positives = 93/168 (55%)
 Frame = -3

Query: 504 TQNPILPLIQNIQTQQLDFKILHAHTITSGLFHDPFTSSRLVEFCFNLKHANLTYGQLIF 325
           +  P L ++Q   T   D + +HAH I +GL H    +SR++ FC +    ++ Y  L+F
Sbjct: 23  SDQPCLTMLQTQCTNMKDLQKIHAHIIKTGLAHHTVAASRVLTFCAS-SSGDINYAYLLF 81

Query: 324 KSIRNPDLYTWNAVMLGYIKLNLPILSISHYGVMLERGVKPNIYTFALVIKACIVNTSGE 145
            +I +P+LY WN ++ G+ + + P L+IS +  ML   V P   T+  V KA     +G 
Sbjct: 82  TTIPSPNLYCWNTIIRGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGY 141

Query: 144 NLVEGGKLGRVIHGQVFKNGVEENVIVRNSIMKMYCNMGCLIEARLLF 1
           +       G  +HG+V K G+E++  ++N+I+ MY N G L EAR +F
Sbjct: 142 D-------GAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVF 182


>ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 56/175 (32%), Positives = 96/175 (54%)
 Frame = -3

Query: 525 ITTFSTKTQNPILPLIQNIQTQQLDFKILHAHTITSGLFHDPFTSSRLVEFCFNLKHANL 346
           + +FS  T +P++ L++  ++     + +H   I  GL  +P   +R++ FC   ++ + 
Sbjct: 32  LKSFSPPT-HPLISLLETCESMD-QLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDF 89

Query: 345 TYGQLIFKSIRNPDLYTWNAVMLGYIKLNLPILSISHYGVMLERGVKPNIYTFALVIKAC 166
            Y + +F  I  P+L+ WN ++ GY +L+ P L +S Y  ML RGVKP+ YTF  + K  
Sbjct: 90  QYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGF 149

Query: 165 IVNTSGENLVEGGKLGRVIHGQVFKNGVEENVIVRNSIMKMYCNMGCLIEARLLF 1
             + + E        GR +HG V K+G++ NV V  ++++MY   G L  AR +F
Sbjct: 150 TRDIALE-------YGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF 197