BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028083
         (455 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containi...   201   5e-50
ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containi...   174   7e-42
emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]   174   7e-42
ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containi...   173   1e-41
ref|XP_002512521.1| pentatricopeptide repeat-containing protein,...   169   2e-40

>ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  201 bits (511), Expect = 5e-50
 Identities = 91/151 (60%), Positives = 118/151 (78%)
 Frame = -1

Query: 455 RNVESWNVVISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEM 276
           RNV SWN V+ GY K G VD+ R LFD M +RD+ SW +MIS YVQ+ R +E +ELFKEM
Sbjct: 221 RNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEM 280

Query: 275 QNDGIRPDGVILSSVLSACGQIGALDMGRWIYSYAGRNKVKYDVFLGTSLVDMYAKCGCI 96
              G+  D +I++S+LSAC QIGALDMGRWI++Y  R+K++ DVFL T+LVDMYAKCGCI
Sbjct: 281 MLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCI 340

Query: 95  DEALRVFDSMVNKNVCTWNAIICGLAMHGYG 3
           D A  VF++M  KN+C+WNA++ GLA+HG+G
Sbjct: 341 DTAFGVFNTMPRKNLCSWNAMLSGLAIHGHG 371



 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 2/144 (1%)
 Frame = -1

Query: 431 VISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQNDGIRPD 252
           ++  Y K G +D    +F+ M +++L SW+AM+SG      G   +ELFK+M++ G+ P+
Sbjct: 330 LVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPN 389

Query: 251 GVILSSVLSACGQIGALDMGRWIYSYAGRN-KVKYDVFLGTSLVDMYAKCGCIDEALRVF 75
            +   +VLSAC  IG+++ G   ++   +   +   V     +VD+  + G I+EA  + 
Sbjct: 390 DITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMI 449

Query: 74  DSM-VNKNVCTWNAIICGLAMHGY 6
            +M +  NV  W A++    +HGY
Sbjct: 450 RTMPLEPNVVIWGALLNACKVHGY 473



 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 41/126 (32%), Positives = 66/126 (52%)
 Frame = -1

Query: 401 VDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQNDGIRPDGVILSSVLSA 222
           +D    +F  ++  D +SW+ MI G+V+++   + +E +  M+  G+  +      VL A
Sbjct: 76  IDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKA 135

Query: 221 CGQIGALDMGRWIYSYAGRNKVKYDVFLGTSLVDMYAKCGCIDEALRVFDSMVNKNVCTW 42
            G   +   GR ++    +    YDVF   +L+ MY KCG I +A  +FD M N NV TW
Sbjct: 136 YGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTW 195

Query: 41  NAIICG 24
           N +I G
Sbjct: 196 NTMITG 201


>ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  174 bits (441), Expect = 7e-42
 Identities = 83/147 (56%), Positives = 104/147 (70%)
 Frame = -1

Query: 449 VESWNVVISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQN 270
           + +WN +ISG+ + G V+V R  FD M +RD  SWSAMI GY+Q     E +E+F +MQ 
Sbjct: 236 ISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQK 295

Query: 269 DGIRPDGVILSSVLSACGQIGALDMGRWIYSYAGRNKVKYDVFLGTSLVDMYAKCGCIDE 90
           + IRP   +L SVLSAC  +GALD GRWI++YA RN ++ D  LGTSLVDMYAKCG ID 
Sbjct: 296 EKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDL 355

Query: 89  ALRVFDSMVNKNVCTWNAIICGLAMHG 9
           A  VF+ M NK V +WNA+I GLAMHG
Sbjct: 356 AWEVFEKMSNKEVSSWNAMIGGLAMHG 382



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
 Frame = -1

Query: 431 VISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQNDGIRPD 252
           ++  Y K G +D+   +F++MS +++ SW+AMI G     R  + I+LF +M    I P+
Sbjct: 343 LVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPN 399

Query: 251 GVILSSVLSACGQIGALDMGRWIY-SYAGRNKVKYDVFLGTSLVDMYAKCGCIDEALRVF 75
            +    VL+AC   G +  G  I+ S      V+  +     +VD+  + G + EA +V 
Sbjct: 400 EITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVV 459

Query: 74  DSM-VNKNVCTWNAIICGLAMHG 9
            S+        W A++     HG
Sbjct: 460 SSIPTEPTPAVWGALLGACRKHG 482



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
 Frame = -1

Query: 383 LFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQNDGIRPDGVILSSVLSACGQIGA 204
           +FD + K ++F W+ MI   +++    + I L+ EM     RP+     +VL AC   G 
Sbjct: 93  VFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGV 152

Query: 203 LDMGRWIYSYAGRNKVKYDVFLGTSLVDMYAKCGCIDEALRVFDSMVNK-NVCTWNAIIC 27
           +  G  ++++  ++ +  D  + +S + MYA  G + EA R+ D    + +   WNA+I 
Sbjct: 153 VAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMID 212

Query: 26  GLAMHG 9
           G    G
Sbjct: 213 GYLRFG 218


>emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  174 bits (441), Expect = 7e-42
 Identities = 83/147 (56%), Positives = 104/147 (70%)
 Frame = -1

Query: 449 VESWNVVISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQN 270
           + +WN +ISG+ + G V+V R  FD M +RD  SWSAMI GY+Q     E +E+F +MQ 
Sbjct: 237 ISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQK 296

Query: 269 DGIRPDGVILSSVLSACGQIGALDMGRWIYSYAGRNKVKYDVFLGTSLVDMYAKCGCIDE 90
           + IRP   +L SVLSAC  +GALD GRWI++YA RN ++ D  LGTSLVDMYAKCG ID 
Sbjct: 297 EKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDL 356

Query: 89  ALRVFDSMVNKNVCTWNAIICGLAMHG 9
           A  VF+ M NK V +WNA+I GLAMHG
Sbjct: 357 AWEVFEKMSNKEVSSWNAMIGGLAMHG 383



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
 Frame = -1

Query: 431 VISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQNDGIRPD 252
           ++  Y K G +D+   +F++MS +++ SW+AMI G     R  + I+LF +M    I P+
Sbjct: 344 LVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPN 400

Query: 251 GVILSSVLSACGQIGALDMGRWIY-SYAGRNKVKYDVFLGTSLVDMYAKCGCIDEALRVF 75
            +    VL+AC   G +  G  I+ S      V+  +     +VD+  + G + EA +V 
Sbjct: 401 EITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVV 460

Query: 74  DSM-VNKNVCTWNAIICGLAMHG 9
            S+        W A++     HG
Sbjct: 461 SSIPTEPTPAVWGALLGACRKHG 483



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
 Frame = -1

Query: 383 LFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQNDGIRPDGVILSSVLSACGQIGA 204
           +FD + K ++F W+ MI   +++    + I L+ EM     RP+     +VL AC   G 
Sbjct: 94  VFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGV 153

Query: 203 LDMGRWIYSYAGRNKVKYDVFLGTSLVDMYAKCGCIDEALRVFDSMVNK-NVCTWNAIIC 27
           +  G  ++++  ++ +  D  + +S + MYA  G + EA R+ D    + +   WNA+I 
Sbjct: 154 VAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMID 213

Query: 26  GLAMHG 9
           G    G
Sbjct: 214 GYLRFG 219


>ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  173 bits (438), Expect = 1e-41
 Identities = 80/151 (52%), Positives = 113/151 (74%), Gaps = 1/151 (0%)
 Frame = -1

Query: 455 RNVESWNVVISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEM 276
           R+V SWN +ISGYC SG VD  R++FD M +++L SWS MISGY ++ + ++ IELF++M
Sbjct: 191 RDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQM 250

Query: 275 QNDG-IRPDGVILSSVLSACGQIGALDMGRWIYSYAGRNKVKYDVFLGTSLVDMYAKCGC 99
           Q++G + P+ V L SVLSAC  +GALD+G+WI+ +  RNK++  +FLG +L DMYAKCGC
Sbjct: 251 QHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGC 310

Query: 98  IDEALRVFDSMVNKNVCTWNAIICGLAMHGY 6
           + EA  VF  M  ++V +W+ II GLAM+GY
Sbjct: 311 VLEAKGVFHEMHERDVISWSIIIMGLAMYGY 341



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 6/148 (4%)
 Frame = -1

Query: 437 NVVISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQNDGIR 258
           N +   Y K G V   + +F  M +RD+ SWS +I G       +E    F EM  DG+ 
Sbjct: 299 NALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLE 358

Query: 257 PDGVILSSVLSACGQIGALDMGRWIYS-----YAGRNKVKYDVFLGTSLVDMYAKCGCID 93
           P+ +    +L+AC   G +D G   +      Y    K+++       +VD+ ++ G +D
Sbjct: 359 PNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEH----YGCVVDLLSRAGRLD 414

Query: 92  EALRVFDSM-VNKNVCTWNAIICGLAMH 12
           +A  + +SM +  NV  W A++ G  ++
Sbjct: 415 QAESLINSMPMQPNVIVWGALLGGCRIY 442



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 36/129 (27%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
 Frame = -1

Query: 386 LLFDR-MSKRDLFSWSAMISGYVQSRRGSEGIELFKE--MQNDGIRPDGVILSSVLSACG 216
           L+F+  +S  ++F+++A++  + Q       I  F    +  +   PD    +SVL AC 
Sbjct: 79  LIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACA 138

Query: 215 QIGALDMGRWIYSYAGRNKVKYDVFLGTSLVDMYAKCGCIDEALRVFDSMVNKNVCTWNA 36
            +  +  G+ ++ +  +   + ++F+  SLVD+Y K GC   A ++FD MV ++V +WN 
Sbjct: 139 GLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNT 198

Query: 35  IICGLAMHG 9
           +I G    G
Sbjct: 199 LISGYCFSG 207


>ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548482|gb|EEF49973.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 422

 Score =  169 bits (428), Expect = 2e-40
 Identities = 80/149 (53%), Positives = 105/149 (70%)
 Frame = -1

Query: 455 RNVESWNVVISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEM 276
           R+V SWNV++SG  K+G V   R LF+ M ++D  SWS+MI GY++     E +E+F  M
Sbjct: 224 RSVGSWNVMVSGLAKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKEALEVFNVM 283

Query: 275 QNDGIRPDGVILSSVLSACGQIGALDMGRWIYSYAGRNKVKYDVFLGTSLVDMYAKCGCI 96
           Q + IRP   +LSSVL+AC  +GALD GRWI++Y  +N +  D  LGT+LVDMYAKCG +
Sbjct: 284 QEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDAVLGTALVDMYAKCGRL 343

Query: 95  DEALRVFDSMVNKNVCTWNAIICGLAMHG 9
           D A  VF++M  K V TWNA+ICGLAMHG
Sbjct: 344 DMAWDVFETMKEKEVFTWNAMICGLAMHG 372



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 25/80 (31%), Positives = 47/80 (58%)
 Frame = -1

Query: 431 VISGYCKSGFVDVGRLLFDRMSKRDLFSWSAMISGYVQSRRGSEGIELFKEMQNDGIRPD 252
           ++  Y K G +D+   +F+ M ++++F+W+AMI G     R  + I+LF +MQ + +R +
Sbjct: 333 LVDMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSN 392

Query: 251 GVILSSVLSACGQIGALDMG 192
            +    +L+AC   G +D G
Sbjct: 393 EITFVGLLNACAHKGMVDEG 412