BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00028081
         (507 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004147236.1| PREDICTED: ATP-dependent Clp protease proteo...   179   3e-47
ref|XP_002329556.1| predicted protein [Populus trichocarpa] gi|1...   172   3e-47
ref|XP_003549948.1| PREDICTED: ATP-dependent Clp protease proteo...   176   2e-45
gb|ACX50407.1| ATP-dependent Clp protease [Eriobotrya japonica]       171   2e-45
ref|XP_002531222.1| ATP-dependent Clp protease proteolytic subun...   171   9e-44

>ref|XP_004147236.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related
           protein 4, chloroplastic-like [Cucumis sativus]
           gi|449510487|ref|XP_004163680.1| PREDICTED:
           ATP-dependent Clp protease proteolytic subunit-related
           protein 4, chloroplastic-like [Cucumis sativus]
          Length = 304

 Score =  179 bits (455), Expect(2) = 3e-47
 Identities = 87/95 (91%), Positives = 90/95 (94%)
 Frame = +3

Query: 222 NTSSGSRGKRGVVTMVIPFLRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEF 401
           N S GS+GKRGVVTMVIPF RGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEF
Sbjct: 74  NYSPGSKGKRGVVTMVIPFARGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEF 133

Query: 402 LYLQYEDDQKPIYLYINSTGTTKGDEKLGYETEAF 506
           LYLQYED+ KPIYLY+NSTGTTKG EKLGYETEAF
Sbjct: 134 LYLQYEDETKPIYLYVNSTGTTKGGEKLGYETEAF 168



 Score = 34.3 bits (77), Expect(2) = 3e-47
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
 Frame = +2

Query: 26  SKTNLQPLRKVSVKSS------LTTSFTAPFVGGSVFTDFTGQKMSPAS 154
           S  N +  R +S+ SS      L+T+F  PF GGSV  +F+G K+ P+S
Sbjct: 22  SSHNGKSNRTLSMSSSSVRMAPLSTNFLIPFAGGSVSGEFSGVKLRPSS 70


>ref|XP_002329556.1| predicted protein [Populus trichocarpa] gi|118483146|gb|ABK93479.1|
           unknown [Populus trichocarpa]
           gi|222870265|gb|EEF07396.1| predicted protein [Populus
           trichocarpa]
          Length = 310

 Score =  172 bits (437), Expect(2) = 3e-47
 Identities = 83/92 (90%), Positives = 88/92 (95%)
 Frame = +3

Query: 231 SGSRGKRGVVTMVIPFLRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYL 410
           S S+GKR VVTMVIP+ RGSAWEQPPPDLASYL+KNRIVYLGMSLVPSVTELILAEFLYL
Sbjct: 83  SSSKGKRSVVTMVIPYTRGSAWEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYL 142

Query: 411 QYEDDQKPIYLYINSTGTTKGDEKLGYETEAF 506
           QYED++KPIYLYINSTGTTKG EKLGYETEAF
Sbjct: 143 QYEDEEKPIYLYINSTGTTKGGEKLGYETEAF 174



 Score = 40.8 bits (94), Expect(2) = 3e-47
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +2

Query: 14  PNKLSKTNLQPLRKVSVKSSLTTSFTAPFVGGSVFTDFTGQKMSP 148
           PN+    +  P    S ++SL+T F +PF GGS+  DF+G K+ P
Sbjct: 30  PNRTLALSSSPSTSSSSRASLSTCFLSPFAGGSITCDFSGTKIRP 74


>ref|XP_003549948.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related
           protein 4, chloroplastic-like [Glycine max]
          Length = 304

 Score =  176 bits (445), Expect(2) = 2e-45
 Identities = 86/91 (94%), Positives = 86/91 (94%)
 Frame = +3

Query: 234 GSRGKRGVVTMVIPFLRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQ 413
           GS  KRGVVTMVIPF RGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQ
Sbjct: 78  GSNAKRGVVTMVIPFQRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQ 137

Query: 414 YEDDQKPIYLYINSTGTTKGDEKLGYETEAF 506
           YEDD KPIYLYINSTGTTKG EKLGYETEAF
Sbjct: 138 YEDDDKPIYLYINSTGTTKGGEKLGYETEAF 168



 Score = 32.0 bits (71), Expect(2) = 2e-45
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 2   KTHFPNKLSKTNLQPLRKVSVKSSLTTSFTAPFVG-GSVFTDFTGQKMSPAS 154
           +T  P +   T+  P+R     +SL+TSF AP+ G  S  + F+G K+ P+S
Sbjct: 24  RTVTPIRCMNTSTSPVR-----TSLSTSFVAPYAGICSASSPFSGHKLRPSS 70


>gb|ACX50407.1| ATP-dependent Clp protease [Eriobotrya japonica]
          Length = 305

 Score =  171 bits (432), Expect(2) = 2e-45
 Identities = 85/91 (93%), Positives = 85/91 (93%)
 Frame = +3

Query: 234 GSRGKRGVVTMVIPFLRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQ 413
           GS  KRGVVTMVI F RGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQ
Sbjct: 78  GSEPKRGVVTMVILFQRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQ 137

Query: 414 YEDDQKPIYLYINSTGTTKGDEKLGYETEAF 506
           YEDD KPIYLYINSTGTTKG EKLGYETEAF
Sbjct: 138 YEDDTKPIYLYINSTGTTKGGEKLGYETEAF 168



 Score = 36.6 bits (83), Expect(2) = 2e-45
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 14  PNKLSKTNLQPLRKVSV-KSSLTTSFTAPFVGGSVFTDFTGQKMSPAS 154
           P   + T   P    S+ ++SL+TSF  PF G S+ ++F+G K+ P+S
Sbjct: 23  PRARNTTRPHPTSSRSLPRASLSTSFLCPFAGNSLSSEFSGHKLRPSS 70


>ref|XP_002531222.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
           communis] gi|223529182|gb|EEF31158.1| ATP-dependent Clp
           protease proteolytic subunit, putative [Ricinus
           communis]
          Length = 314

 Score =  171 bits (434), Expect(2) = 9e-44
 Identities = 83/92 (90%), Positives = 87/92 (94%)
 Frame = +3

Query: 231 SGSRGKRGVVTMVIPFLRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYL 410
           S  RGKR VVTMVIP+ RGSAWEQPPPDLASYL+KNRIVYLGMSLVPSVTELILAEFLYL
Sbjct: 87  SNFRGKRSVVTMVIPYTRGSAWEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYL 146

Query: 411 QYEDDQKPIYLYINSTGTTKGDEKLGYETEAF 506
           QYED++KPIYLYINSTGTTKG EKLGYETEAF
Sbjct: 147 QYEDEEKPIYLYINSTGTTKGGEKLGYETEAF 178



 Score = 30.4 bits (67), Expect(2) = 9e-44
 Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +2

Query: 68  SSLTTSFTAPFVG-GSVFTDFTGQKMSP 148
           SSL+TSF + F G GSV  DF+G K+ P
Sbjct: 51  SSLSTSFFSSFSGSGSVIGDFSGMKVRP 78