BLASTX nr result
ID: Coptis23_contig00027994
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00027994
(305 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containi... 110 1e-22
ref|XP_002525572.1| pentatricopeptide repeat-containing protein,... 105 3e-21
ref|XP_002886049.1| pentatricopeptide repeat-containing protein ... 89 3e-16
tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea m... 87 2e-15
ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 86 3e-15
>ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
[Vitis vinifera]
Length = 644
Score = 110 bits (275), Expect = 1e-22
Identities = 52/99 (52%), Positives = 74/99 (74%)
Frame = +2
Query: 8 EAVTVLKVFGFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGY 187
EA+ VL+VF + N FV+NSFISKLC DG+M++A ++F +M E+G+ PD SYTT++ GY
Sbjct: 309 EAMDVLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGY 368
Query: 188 CGVGNLNKALMLVSQMLKNGFKLAVVTYTVLIDSYCKIG 304
C V +++ AL + +MLK G + +V TYT+LIDS CK G
Sbjct: 369 CKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPG 407
Score = 60.5 bits (145), Expect = 1e-07
Identities = 32/94 (34%), Positives = 51/94 (54%)
Frame = +2
Query: 23 LKVFGFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGYCGVGN 202
+K G NA + + FIS C G++ +L EM LGI PD +YT +I C +
Sbjct: 212 MKSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSL 271
Query: 203 LNKALMLVSQMLKNGFKLAVVTYTVLIDSYCKIG 304
L +A ++ +M + G L V+ + ++D YCK+G
Sbjct: 272 LKEATSILFKMTQMGVFLDSVSVSSVVDGYCKVG 305
Score = 57.8 bits (138), Expect = 9e-07
Identities = 33/90 (36%), Positives = 42/90 (46%)
Frame = +2
Query: 35 GFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKA 214
G + Y I C G+M A LF M G+ PD SY T++ GY G+L KA
Sbjct: 388 GIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNTLMNGYGKKGHLQKA 447
Query: 215 LMLVSQMLKNGFKLAVVTYTVLIDSYCKIG 304
L+S M G +VTY +LI K G
Sbjct: 448 FELLSMMRSAGVSPDLVTYNILIHGLIKRG 477
>ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223535151|gb|EEF36831.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 687
Score = 105 bits (263), Expect = 3e-21
Identities = 49/100 (49%), Positives = 70/100 (70%)
Frame = +2
Query: 5 NEAVTVLKVFGFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKG 184
++A+ +L F N FVY+SF++KLC DG+M++A + F EMSE G++PD YT II G
Sbjct: 341 DKAINLLNFFNVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGG 400
Query: 185 YCGVGNLNKALMLVSQMLKNGFKLAVVTYTVLIDSYCKIG 304
YC VG++NKA + +MLK G +V TYT+LI++ CK G
Sbjct: 401 YCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSG 440
Score = 58.2 bits (139), Expect = 7e-07
Identities = 28/97 (28%), Positives = 52/97 (53%)
Frame = +2
Query: 8 EAVTVLKVFGFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGY 187
E + +++ G + + YN+ I L G +A ++ HE+ G+ PD ++T +I G+
Sbjct: 482 ELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVIDGF 541
Query: 188 CGVGNLNKALMLVSQMLKNGFKLAVVTYTVLIDSYCK 298
GN +A ++ S M + K VVT + L++ YC+
Sbjct: 542 SKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCR 578
>ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297331889|gb|EFH62308.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 755
Score = 89.4 bits (220), Expect = 3e-16
Identities = 42/99 (42%), Positives = 63/99 (63%)
Frame = +2
Query: 8 EAVTVLKVFGFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGY 187
EA+ ++ F N FVY+SF+S +C GDM++A +F E+ ELG+ PD YTT+I GY
Sbjct: 426 EAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGY 485
Query: 188 CGVGNLNKALMLVSQMLKNGFKLAVVTYTVLIDSYCKIG 304
C +G +KA +LK+G +++TYT+LI + K G
Sbjct: 486 CTLGRTDKAFQFFGALLKSGNPPSLITYTLLIGACSKFG 524
Score = 64.3 bits (155), Expect = 1e-08
Identities = 33/100 (33%), Positives = 52/100 (52%)
Frame = +2
Query: 5 NEAVTVLKVFGFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKG 184
NE ++ L GF +A + I L GD +A L+ M++L + PD + + ++ G
Sbjct: 600 NEIISELIRRGFVPSALAFTDVIGGLSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHG 659
Query: 185 YCGVGNLNKALMLVSQMLKNGFKLAVVTYTVLIDSYCKIG 304
YC + KA++L ++L G K VV Y LI YC +G
Sbjct: 660 YCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSVG 699
>tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
Length = 1098
Score = 86.7 bits (213), Expect = 2e-15
Identities = 37/86 (43%), Positives = 54/86 (62%)
Frame = +2
Query: 47 NAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKALMLV 226
N FVYN I+ C G MV+AH + HEM+ +G+ PD+ SY +++ GYC G +NKA
Sbjct: 383 NLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETY 442
Query: 227 SQMLKNGFKLAVVTYTVLIDSYCKIG 304
+ ML+NGF +TY L+ +C +G
Sbjct: 443 NTMLRNGFAATTLTYNALLKGFCSLG 468
Score = 70.1 bits (170), Expect = 2e-10
Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Frame = +2
Query: 2 LNEAVTVLKVF---GFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTT 172
L+ AV++ K G + NA YN+ I K C DG + +A +L M E GIHP +Y+
Sbjct: 811 LSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSI 870
Query: 173 IIKGYCGVGNLNKALMLVSQMLKNGFKLAVVTYTVLIDSYCK 298
+I G C G + +A+ L+ QM++N VTY LI Y +
Sbjct: 871 LINGLCTQGYMEEAIKLLDQMIENNVDPNYVTYWTLIQGYVR 912
Score = 63.9 bits (154), Expect = 1e-08
Identities = 34/96 (35%), Positives = 53/96 (55%)
Frame = +2
Query: 17 TVLKVFGFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGYCGV 196
T+L V G N YNS I LC G++ +A LF ++ GI P++ +Y T+I +C
Sbjct: 785 TMLSV-GLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKD 843
Query: 197 GNLNKALMLVSQMLKNGFKLAVVTYTVLIDSYCKIG 304
G + +A L +M++ G V TY++LI+ C G
Sbjct: 844 GYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQG 879
Score = 57.0 bits (136), Expect = 2e-06
Identities = 31/94 (32%), Positives = 48/94 (51%)
Frame = +2
Query: 23 LKVFGFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGYCGVGN 202
LK GF + F Y+S I G + A +L M +G+ P+ +Y ++I G C G
Sbjct: 751 LKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGE 810
Query: 203 LNKALMLVSQMLKNGFKLAVVTYTVLIDSYCKIG 304
L++A+ L ++ G +TY LID +CK G
Sbjct: 811 LSRAVSLFKKLWTKGISPNAITYNTLIDKHCKDG 844
>ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 85.9 bits (211), Expect = 3e-15
Identities = 44/104 (42%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Frame = +2
Query: 2 LNEAVTVLKVF---GFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTT 172
+ EA +L++ G N YN I+ LC +G M + E+ EMS+ PD ++ T
Sbjct: 254 IGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNT 313
Query: 173 IIKGYCGVGNLNKALMLVSQMLKNGFKLAVVTYTVLIDSYCKIG 304
+I GYC VGN ++AL+L ++M+KNG VVTYT LI+S CK G
Sbjct: 314 LINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAG 357
Score = 72.8 bits (177), Expect = 3e-11
Identities = 30/90 (33%), Positives = 55/90 (61%)
Frame = +2
Query: 35 GFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKA 214
G + N Y + I+ +C G++ +A E +M + G+HP+ +YTT+I G+ G L +A
Sbjct: 338 GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQA 397
Query: 215 LMLVSQMLKNGFKLAVVTYTVLIDSYCKIG 304
++ +M++NGF ++TY LI+ +C +G
Sbjct: 398 YQIMKEMVENGFTPTIITYNALINGHCILG 427
Score = 71.6 bits (174), Expect = 6e-11
Identities = 35/88 (39%), Positives = 53/88 (60%)
Frame = +2
Query: 35 GFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKA 214
G + + Y+S I LC + + +LF EM LG+ PD +YT++I YC G+L+KA
Sbjct: 478 GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKA 537
Query: 215 LMLVSQMLKNGFKLAVVTYTVLIDSYCK 298
L L +M++ GF +VTY VLI+ + K
Sbjct: 538 LRLHDEMIQKGFSPDIVTYNVLINGFNK 565
Score = 68.2 bits (165), Expect = 7e-10
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Frame = +2
Query: 2 LNEAVTVL---KVFGFADNAFVYNSFISKLCWDGDMVQAHE-LFHEMSELGIHPDSCSYT 169
+N+A++++ K +GF YN+ + + V+ E +F EM E G+ P+ +Y
Sbjct: 148 INKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYN 207
Query: 170 TIIKGYCGVGNLNKALMLVSQMLKNGFKLAVVTYTVLIDSYCKI 301
+I+G+C GNL L +M +NG VVTY +ID+YCK+
Sbjct: 208 ILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKL 251
Score = 65.1 bits (157), Expect = 6e-09
Identities = 39/102 (38%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Frame = +2
Query: 2 LNEAVTVLKVF---GFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTT 172
L +A ++K GF YN+ I+ C G M A L EM E G PD SY+T
Sbjct: 394 LKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYST 453
Query: 173 IIKGYCGVGNLNKALMLVSQMLKNGFKLAVVTYTVLIDSYCK 298
II G+C L KA L +M+ G V TY+ LI CK
Sbjct: 454 IISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCK 495
Score = 58.2 bits (139), Expect = 7e-07
Identities = 31/89 (34%), Positives = 47/89 (52%)
Frame = +2
Query: 38 FADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKAL 217
+ + +N+ I+ C G+ QA L EM + G+ P+ +YTT+I C GNLN+A+
Sbjct: 304 YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAM 363
Query: 218 MLVSQMLKNGFKLAVVTYTVLIDSYCKIG 304
+ QM G TYT LID + + G
Sbjct: 364 EFLDQMRDRGLHPNGRTYTTLIDGFSQQG 392
Score = 58.2 bits (139), Expect = 7e-07
Identities = 31/87 (35%), Positives = 48/87 (55%)
Frame = +2
Query: 35 GFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKA 214
GF + Y++ IS C + ++ +A +L EM GI PD +Y+++I+G C L +
Sbjct: 443 GFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEV 502
Query: 215 LMLVSQMLKNGFKLAVVTYTVLIDSYC 295
L +ML G VTYT LI++YC
Sbjct: 503 CDLFQEMLSLGLPPDEVTYTSLINAYC 529
Score = 57.4 bits (137), Expect = 1e-06
Identities = 27/88 (30%), Positives = 46/88 (52%)
Frame = +2
Query: 35 GFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKA 214
G N Y + I G + QA+++ EM E G P +Y +I G+C +G + A
Sbjct: 373 GLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDA 432
Query: 215 LMLVSQMLKNGFKLAVVTYTVLIDSYCK 298
L+ +M++ GF VV+Y+ +I +C+
Sbjct: 433 SGLLQEMIERGFIPDVVSYSTIISGFCR 460
Score = 55.1 bits (131), Expect = 6e-06
Identities = 27/90 (30%), Positives = 43/90 (47%)
Frame = +2
Query: 35 GFADNAFVYNSFISKLCWDGDMVQAHELFHEMSELGIHPDSCSYTTIIKGYCGVGNLNKA 214
G + N + YN I C G++ F EM G P+ +Y TII YC + + +A
Sbjct: 198 GVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEA 257
Query: 215 LMLVSQMLKNGFKLAVVTYTVLIDSYCKIG 304
L+ M G +++Y V+I+ C+ G
Sbjct: 258 FKLLRLMALKGLNPNLISYNVVINGLCREG 287