BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027969
         (1249 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containi...   550   e-154
ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containi...   546   e-153
emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]   545   e-152
ref|XP_002300569.1| predicted protein [Populus trichocarpa] gi|2...   495   e-137
ref|XP_003624942.1| Pentatricopeptide repeat-containing protein ...   494   e-137

>ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like
            [Vitis vinifera]
          Length = 891

 Score =  550 bits (1416), Expect = e-154
 Identities = 276/472 (58%), Positives = 340/472 (72%), Gaps = 57/472 (12%)
 Frame = -3

Query: 1247 KIHSWVFKLGYCLDLFVGSSLLHMYSRFGFMGDGRRVFDEMSVRDLGTWNAMISGFCQNG 1068
            KIH W FKLG+  ++FV +SL+HMYSRFGF G  R +FD+M  RD+G+WNAMISG  QNG
Sbjct: 236  KIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG 295

Query: 1067 KAVEALDVFREMCMEGVKMDSMTVSSILPVCAPLNDLDTGMFAHVYVIKNGLEFDVYVSN 888
             A +ALDV  EM +EG+KM+ +TV SILPVC  L D+ T M  H+YVIK+GLEFD++VSN
Sbjct: 296  NAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSN 355

Query: 887  ALINMYAKFGMLELARSIFYQMMVRDLVSWNSLIAAYEQNSDPITALGYFVEMKRNGFQP 708
            ALINMYAKFG LE AR  F QM + D+VSWNS+IAAYEQN DP+TA G+FV+M+ NGFQP
Sbjct: 356  ALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQP 415

Query: 707  ------------------------------------DILTFVSLASIVAQSGDAENSKSV 636
                                                D++   ++  + A+ G  +++  V
Sbjct: 416  DLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKV 475

Query: 635  ---------------------NGLASEAMEVYKTMRECEMIVPTQGTLVSILPAYSHVGA 519
                                 NGLASEA+EVYK M EC+ I+P QGT VSILPAY+HVGA
Sbjct: 476  FEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGA 535

Query: 518  LRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMLLFKQVPRKSSVPWNAIISG 339
            L+QGMK+HG  +K  L  D++V TCLIDVY KCGRL DAM LF QVP++SSV WNAIIS 
Sbjct: 536  LQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISC 595

Query: 338  HGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAGLIDQGQQCFKLMQEKYCIQP 159
            HGIHG  EK+L LFGEM +EGVKPDHVTFVSLLSACSH+G +++G+ CF+LMQE Y I+P
Sbjct: 596  HGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKP 654

Query: 158  GLKHFGCIVDLLGRAGHLDMAYDFIKNMPVRPDASVWGALLGACRIHGNVEL 3
             LKH+GC+VDLLGRAG+L+MAYDFIK+MP++PDAS+WGALLGACRIHGN+EL
Sbjct: 655  SLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIEL 706



 Score =  179 bits (453), Expect = 2e-42
 Identities = 119/471 (25%), Positives = 222/471 (47%), Gaps = 58/471 (12%)
 Frame = -3

Query: 1244 IHSWVFKLGYCLDLFVGSSLLHMYSRFGFMGDGRRVFDEMSVRDLGTWNAMISGFCQNGK 1065
            +H+ +   G    +F+ + L+++Y+  G +   R  FD++  +D+  WN+MIS +  NG 
Sbjct: 138  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197

Query: 1064 AVEALDVFREMCMEG-VKMDSMTVSSILPVCAPLNDLDTGMFAHVYVIKNGLEFDVYVSN 888
              EA+  F ++ +   ++ D  T   +L  C  L D   G   H +  K G +++V+V+ 
Sbjct: 198  FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAA 254

Query: 887  ALINMYAKFGMLELARSIFYQMMVRDLVSWNSLIAAYEQNSDPITALGYFVEMKRNGFQP 708
            +LI+MY++FG   +ARS+F  M  RD+ SWN++I+   QN +   AL    EM+  G + 
Sbjct: 255  SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 314

Query: 707  DILTFVSLASIVAQSGDAENSKSVN-------------------------GLASEAMEVY 603
            + +T VS+  +  Q GD   +  ++                         G   +A + +
Sbjct: 315  NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF 374

Query: 602  KTMRECEMI------------------------------VPTQGTLVSILPAYSHVGALR 513
            + M   +++                               P   TLVS+    +     +
Sbjct: 375  QQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCK 434

Query: 512  QGMKVHGHTVKIG-LLSDIYVGTCLIDVYAKCGRLNDAMLLFKQVPRKSSVPWNAIISGH 336
                VHG  ++ G L+ D+ +G  ++D+YAK G L+ A  +F+ +P K  + WN +I+G+
Sbjct: 435  NSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGY 494

Query: 335  GIHGQGEKSLSLFGEMEE-EGVKPDHVTFVSLLSACSHAGLIDQGQQCFKLMQEKYCIQP 159
              +G   +++ ++  MEE + + P+  T+VS+L A +H G + QG +    +  K  +  
Sbjct: 495  AQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRV-IKTNLHL 553

Query: 158  GLKHFGCIVDLLGRAGHLDMAYDFIKNMPVRPDASVWGALLGACRIHGNVE 6
             +    C++D+ G+ G L  A      +P +  +  W A++    IHG+ E
Sbjct: 554  DVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAE 603



 Score = 79.3 bits (194), Expect = 2e-12
 Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 8/218 (3%)
 Frame = -3

Query: 1247 KIHSWVFKLGYCLDLFVGSSLLHMYSRFGFMGDGRRVFDEMSVRDLGTWNAMISGFCQNG 1068
            KIH  V K    LD+FV + L+ +Y + G + D   +F ++      TWNA+IS    +G
Sbjct: 541  KIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHG 600

Query: 1067 KAVEALDVFREMCMEGVKMDSMTVSSILPVCAPLNDLDTGMFAHVYVIKNGLEFDVYVSN 888
             A + L +F EM  EGVK D +T  S+L  C+    ++ G +    + + G++  +    
Sbjct: 601  HAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYG 660

Query: 887  ALINMYAKFGMLELARSIFYQMMVR-DLVSWNSLIAAYEQNSDPITALGYF-------VE 732
             ++++  + G LE+A      M ++ D   W +L+ A   + +    LG F       V+
Sbjct: 661  CMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGN--IELGKFASDRLFEVD 718

Query: 731  MKRNGFQPDILTFVSLASIVAQSGDAENSKSVNGLASE 618
             K  G+      +V L++I A  G  E    V  LA E
Sbjct: 719  SKNVGY------YVLLSNIYANVGKWEGVDKVRSLARE 750


>ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like
            [Vitis vinifera]
          Length = 848

 Score =  546 bits (1406), Expect = e-153
 Identities = 275/472 (58%), Positives = 342/472 (72%), Gaps = 57/472 (12%)
 Frame = -3

Query: 1247 KIHSWVFKLGYCLDLFVGSSLLHMYSRFGFMGDGRRVFDEMSVRDLGTWNAMISGFCQNG 1068
            KIH WVFKLG+  D+FV +SL+HMYSRFGF+G  R +FD+M  RD+G+WNAMISG  QNG
Sbjct: 193  KIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNG 252

Query: 1067 KAVEALDVFREMCMEGVKMDSMTVSSILPVCAPLNDLDTGMFAHVYVIKNGLEFDVYVSN 888
             A +ALDV  EM +EG+ MDS+TV+SILPVCA L D+ T    H+YVIK+GLEF+++VSN
Sbjct: 253  NAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSN 312

Query: 887  ALINMYAKFGMLELARSIFYQMMVRDLVSWNSLIAAYEQNSDPITALGYFVEMKRNGFQP 708
            ALINMYAKFG L  A+ +F QM +RD+VSWNS+IAAYEQN DP+TA G+F +M+ NG +P
Sbjct: 313  ALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEP 372

Query: 707  D---ILTFVSLAS---------------------------------IVAQSGDAENSKSV 636
            D   +++  S+A+                                 + A+ G  +++  V
Sbjct: 373  DLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKV 432

Query: 635  ---------------------NGLASEAMEVYKTMRECEMIVPTQGTLVSILPAYSHVGA 519
                                 NGLASEA+EVY+ M EC  I   QGT VSIL AY+HVGA
Sbjct: 433  FNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGA 492

Query: 518  LRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMLLFKQVPRKSSVPWNAIISG 339
            L+QGM++HGH +K  L  D++VGTCLID+Y KCGRL DAM LF QVPR+SSVPWNAIIS 
Sbjct: 493  LQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISC 552

Query: 338  HGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAGLIDQGQQCFKLMQEKYCIQP 159
            HGIHG GEK+L LF EM++EGVKPDHVTF+SLLSACSH+GL+D+G+  F LMQE Y I+P
Sbjct: 553  HGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE-YGIKP 611

Query: 158  GLKHFGCIVDLLGRAGHLDMAYDFIKNMPVRPDASVWGALLGACRIHGNVEL 3
             LKH+GC+VDLLGRAG L+MAYDFIK+MP+ PDAS+WGALLGACRIHGN+EL
Sbjct: 612  SLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIEL 663



 Score =  181 bits (458), Expect = 5e-43
 Identities = 129/477 (27%), Positives = 223/477 (46%), Gaps = 63/477 (13%)
 Frame = -3

Query: 1247 KIHSWVFKLGYCLDLFVGSSLLHMYSRFGFMGDGRRVFDEMSVRDLGTWNAMISGFCQNG 1068
            ++H+ +   G     F+   L+++Y+  G +   R  FD++  +D+ TWN+MIS + +NG
Sbjct: 94   RLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNG 153

Query: 1067 KAVEALDVFREMCM-EGVKMDSMTVSSILPVCAPLNDLDTGMFAHVYVIKNGLEFDVYVS 891
               EA+D F ++ +    + D  T   +L  C  L D   G   H +V K G ++DV+V+
Sbjct: 154  HFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVFVA 210

Query: 890  NALINMYAKFGMLELARSIFYQMMVRDLVSWNSLIAAYEQNSDPITALGYFVEMKRNGFQ 711
             +LI+MY++FG + +ARS+F  M  RD+ SWN++I+   QN +   AL    EM+  G  
Sbjct: 211  ASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIN 270

Query: 710  PDILTFVSLASIVAQSGDAENSKSVN-------------------------GLASEAMEV 606
             D +T  S+  + AQ GD   +  ++                         G   +A +V
Sbjct: 271  MDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKV 330

Query: 605  YKTM------------------------------RECEMIVPTQGTLVSILPAYSHVGAL 516
            ++ M                               +   + P   TLVS+    +     
Sbjct: 331  FQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDY 390

Query: 515  RQGMKVHGHTVKIG-LLSDIYVGTCLIDVYAKCGRLNDAMLLFKQVPRKSSVPWNAIISG 339
            +    VHG  ++ G L+  + +G  ++D+YAK G ++ A  +F  +P K  V WN +ISG
Sbjct: 391  KNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISG 450

Query: 338  HGIHGQGEKSLSLFGEMEE-EGVKPDHVTFVSLLSACSHAGLIDQGQQCFKLMQEKYCIQ 162
            +  +G   +++ ++  MEE   +K +  T+VS+L+A +H G + QG +        + I+
Sbjct: 451  YTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRI-----HGHLIK 505

Query: 161  PGLKHFG-----CIVDLLGRAGHLDMAYDFIKNMPVRPDASVWGALLGACRIHGNVE 6
              L H       C++DL G+ G L  A      +P R  +  W A++    IHG+ E
Sbjct: 506  TNL-HLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWNAIISCHGIHGHGE 560



 Score = 78.2 bits (191), Expect = 4e-12
 Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 4/214 (1%)
 Frame = -3

Query: 1247 KIHSWVFKLGYCLDLFVGSSLLHMYSRFGFMGDGRRVFDEMSVRDLGTWNAMISGFCQNG 1068
            +IH  + K    LD+FVG+ L+ +Y + G + D   +F ++       WNA+IS    +G
Sbjct: 498  RIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHG 557

Query: 1067 KAVEALDVFREMCMEGVKMDSMTVSSILPVCAPLNDLDTGMFAHVYVIKNGLEFDVYVSN 888
               +AL +FREM  EGVK D +T  S+L  C+    +D G +    + + G++  +    
Sbjct: 558  HGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYG 617

Query: 887  ALINMYAKFGMLELARSIFYQMMVR-DLVSWNSLIAAYEQNSDPITALGYFVEMKRNGFQ 711
             ++++  + G LE+A      M +  D   W +L+ A   + +    LG F   +   F+
Sbjct: 618  CMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGN--IELGKFASDRL--FE 673

Query: 710  PD---ILTFVSLASIVAQSGDAENSKSVNGLASE 618
             D   +  +V L++I A  G  E    V  LA E
Sbjct: 674  VDSENVGYYVLLSNIYANVGKWEGVDKVRSLARE 707


>emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  545 bits (1403), Expect = e-152
 Identities = 273/472 (57%), Positives = 339/472 (71%), Gaps = 57/472 (12%)
 Frame = -3

Query: 1247 KIHSWVFKLGYCLDLFVGSSLLHMYSRFGFMGDGRRVFDEMSVRDLGTWNAMISGFCQNG 1068
            +IH W FKLG+  ++FV +SL+HMYSRFGF G  R +FD+M  RD+G+WNAMISG  QNG
Sbjct: 236  RIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG 295

Query: 1067 KAVEALDVFREMCMEGVKMDSMTVSSILPVCAPLNDLDTGMFAHVYVIKNGLEFDVYVSN 888
             A +ALDV  EM +EG+KM+ +TV SILPVC  L D+ T M  H+YVIK+GLEFD++VSN
Sbjct: 296  NAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSN 355

Query: 887  ALINMYAKFGMLELARSIFYQMMVRDLVSWNSLIAAYEQNSDPITALGYFVEMKRNGFQP 708
            ALINMYAKFG LE AR  F QM + D+VSWNS+IAAYEQN DP+TA G+FV+M+ NGFQP
Sbjct: 356  ALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQP 415

Query: 707  ------------------------------------DILTFVSLASIVAQSGDAENSKSV 636
                                                D++   ++  + A+ G  +++  V
Sbjct: 416  DLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKV 475

Query: 635  ---------------------NGLASEAMEVYKTMRECEMIVPTQGTLVSILPAYSHVGA 519
                                 NGLASEA+EVYK M EC+ I+P QGT VSILPAY+HVGA
Sbjct: 476  FEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGA 535

Query: 518  LRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMLLFKQVPRKSSVPWNAIISG 339
            L+QGM++HG  +K  L  D++V TCLIDVY KCGRL DAM LF QVP++SSV WNAIIS 
Sbjct: 536  LQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISC 595

Query: 338  HGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAGLIDQGQQCFKLMQEKYCIQP 159
            HGIHG  EK+L LFGEM +EGVKPDHVTFVSLLSACSH+G +++G+ CF+LMQE Y I+P
Sbjct: 596  HGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKP 654

Query: 158  GLKHFGCIVDLLGRAGHLDMAYDFIKNMPVRPDASVWGALLGACRIHGNVEL 3
             LKH+GC+VDLLGRAG+L+MAY FIK+MP++PDAS+WGALLGACRIHGN+EL
Sbjct: 655  SLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIEL 706



 Score =  177 bits (448), Expect = 7e-42
 Identities = 119/471 (25%), Positives = 222/471 (47%), Gaps = 58/471 (12%)
 Frame = -3

Query: 1244 IHSWVFKLGYCLDLFVGSSLLHMYSRFGFMGDGRRVFDEMSVRDLGTWNAMISGFCQNGK 1065
            +H+ +   G    +F+ + L+++Y+  G +   R  FD++  +D+ TWN+MIS +  NG 
Sbjct: 138  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197

Query: 1064 AVEALDVFREMCMEG-VKMDSMTVSSILPVCAPLNDLDTGMFAHVYVIKNGLEFDVYVSN 888
              EA+  F ++ +   ++ D  T   +L  C  L D   G   H +  K G +++V+V+ 
Sbjct: 198  FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAA 254

Query: 887  ALINMYAKFGMLELARSIFYQMMVRDLVSWNSLIAAYEQNSDPITALGYFVEMKRNGFQP 708
            +LI+MY++FG   +ARS+F  M  RD+ SWN++I+   QN +   AL    EM+  G + 
Sbjct: 255  SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 314

Query: 707  DILTFVSLASIVAQSGDAENSKSVN-------------------------GLASEAMEVY 603
            + +T VS+  +  Q GD   +  ++                         G   +A + +
Sbjct: 315  NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF 374

Query: 602  KTMRECEMI------------------------------VPTQGTLVSILPAYSHVGALR 513
            + M   +++                               P   TLVS+    +     +
Sbjct: 375  QQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCK 434

Query: 512  QGMKVHGHTVKIG-LLSDIYVGTCLIDVYAKCGRLNDAMLLFKQVPRKSSVPWNAIISGH 336
                VHG  ++ G L+ D+ +G  ++D+YAK G L+ A  +F+ +  K  + WN +I+G+
Sbjct: 435  NSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGY 494

Query: 335  GIHGQGEKSLSLFGEMEE-EGVKPDHVTFVSLLSACSHAGLIDQGQQCFKLMQEKYCIQP 159
              +G   +++ ++  MEE + + P+  T+VS+L A +H G + QG +    +  K  +  
Sbjct: 495  AQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRV-IKTNLHL 553

Query: 158  GLKHFGCIVDLLGRAGHLDMAYDFIKNMPVRPDASVWGALLGACRIHGNVE 6
             +    C++D+ G+ G L  A      +P +  +  W A++    IHG+ E
Sbjct: 554  DVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAE 603



 Score = 78.2 bits (191), Expect = 4e-12
 Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 8/218 (3%)
 Frame = -3

Query: 1247 KIHSWVFKLGYCLDLFVGSSLLHMYSRFGFMGDGRRVFDEMSVRDLGTWNAMISGFCQNG 1068
            +IH  V K    LD+FV + L+ +Y + G + D   +F ++      TWNA+IS    +G
Sbjct: 541  RIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHG 600

Query: 1067 KAVEALDVFREMCMEGVKMDSMTVSSILPVCAPLNDLDTGMFAHVYVIKNGLEFDVYVSN 888
             A + L +F EM  EGVK D +T  S+L  C+    ++ G +    + + G++  +    
Sbjct: 601  HAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYG 660

Query: 887  ALINMYAKFGMLELARSIFYQMMVR-DLVSWNSLIAAYEQNSDPITALGYF-------VE 732
             ++++  + G LE+A      M ++ D   W +L+ A   + +    LG F       V+
Sbjct: 661  CMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGN--IELGKFASDRLFEVD 718

Query: 731  MKRNGFQPDILTFVSLASIVAQSGDAENSKSVNGLASE 618
             K  G+      +V L++I A  G  E    V  LA E
Sbjct: 719  SKNVGY------YVLLSNIYANVGKWEGVDKVRSLARE 750


>ref|XP_002300569.1| predicted protein [Populus trichocarpa] gi|222847827|gb|EEE85374.1|
            predicted protein [Populus trichocarpa]
          Length = 568

 Score =  495 bits (1274), Expect = e-137
 Identities = 241/415 (58%), Positives = 306/415 (73%)
 Frame = -3

Query: 1247 KIHSWVFKLGYCLDLFVGSSLLHMYSRFGFMGDGRRVFDEMSVRDLGTWNAMISGFCQNG 1068
            KIH  V KLG+  D+FV +SL+HMYSRFG +GD R++FD+M  RD G+WNAMISG+CQNG
Sbjct: 15   KIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNG 74

Query: 1067 KAVEALDVFREMCMEGVKMDSMTVSSILPVCAPLNDLDTGMFAHVYVIKNGLEFDVYVSN 888
             A EALD+  EM +EGVKMD++TV+S+LPVCA + D+ +G   H+YVIK+GLEF+++VSN
Sbjct: 75   NAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSN 134

Query: 887  ALINMYAKFGMLELARSIFYQMMVRDLVSWNSLIAAYEQNSDPITALGYFVEMKRNGFQP 708
            ALINMYAKFG L  A+ +F  ++++D+VSWN+LI  Y QN                    
Sbjct: 135  ALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQN-------------------- 173

Query: 707  DILTFVSLASIVAQSGDAENSKSVNGLASEAMEVYKTMRECEMIVPTQGTLVSILPAYSH 528
                                     GLASEA+EVY  M E E I+P QGT VSILPAYSH
Sbjct: 174  -------------------------GLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSH 208

Query: 527  VGALRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMLLFKQVPRKSSVPWNAI 348
            VGAL+QGM++HG  +K  L SD++VGTCLID+Y KCG+L+DA+ LF QVPRK+SVPWNA+
Sbjct: 209  VGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAM 268

Query: 347  ISGHGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAGLIDQGQQCFKLMQEKYC 168
            IS +G+HG GEK+L LF EM+ E VKPDH+TFVSLLSACSH+GL+   Q CF +M+E+Y 
Sbjct: 269  ISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYG 328

Query: 167  IQPGLKHFGCIVDLLGRAGHLDMAYDFIKNMPVRPDASVWGALLGACRIHGNVEL 3
            I+P LKH+GC+VDL GRAG L+MA++FIK MP++PDAS WGALL ACRIHGN+EL
Sbjct: 329  IKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIEL 383


>ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355499957|gb|AES81160.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  494 bits (1272), Expect = e-137
 Identities = 249/472 (52%), Positives = 329/472 (69%), Gaps = 57/472 (12%)
 Frame = -3

Query: 1247 KIHSWVFKLGYCLDLFVGSSLLHMYSRFGFMGDGRRVFDEMSVRDLGTWNAMISGFCQNG 1068
            K+H  VFK+G+  D+FV +SL+H+YSR+G +    +VF +M V+D+G+WNAMISGFCQNG
Sbjct: 142  KVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNG 201

Query: 1067 KAVEALDVFREMCMEGVKMDSMTVSSILPVCAPLNDLDTGMFAHVYVIKNGLEFDVYVSN 888
             A  AL V   M  EGVKMD++TV+SILPVCA  +D+  G+  H++V+K+GL+ DV+VSN
Sbjct: 202  NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSN 261

Query: 887  ALINMYAKFGMLELARSIFYQMMVRDLVSWNSLIAAYEQNSDPITALGYFVEMKRNGFQP 708
            ALINMY+KFG L+ A+ +F QM VRDLVSWNS+IAAYEQN+DP TAL +F  M+  G +P
Sbjct: 262  ALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRP 321

Query: 707  D----------------------ILTFV--------------SLASIVAQSGDAENSKSV 636
            D                      IL FV              +L ++ A+ G    + +V
Sbjct: 322  DLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTV 381

Query: 635  ---------------------NGLASEAMEVYKTMRECEMIVPTQGTLVSILPAYSHVGA 519
                                 NGLASEA++ Y  M EC   +P QGT VSI+PAYSHVGA
Sbjct: 382  FDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGA 441

Query: 518  LRQGMKVHGHTVKIGLLSDIYVGTCLIDVYAKCGRLNDAMLLFKQVPRKSSVPWNAIISG 339
            L+QGMK+H   +K  L  D++V TCLID+Y KCGRL DAM LF ++PR +SVPWNAII+ 
Sbjct: 442  LQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIAS 501

Query: 338  HGIHGQGEKSLSLFGEMEEEGVKPDHVTFVSLLSACSHAGLIDQGQQCFKLMQEKYCIQP 159
             GIHG+GE++L LF +M  E VK DH+TFVSLLSACSH+GL+D+GQ+CF +MQ++Y I+P
Sbjct: 502  LGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKP 561

Query: 158  GLKHFGCIVDLLGRAGHLDMAYDFIKNMPVRPDASVWGALLGACRIHGNVEL 3
             LKH+GC+VDLLGRAG+L+ AY+ ++NMP++PDAS+WGALL AC+I+GN EL
Sbjct: 562  SLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAEL 613



 Score =  183 bits (465), Expect = 7e-44
 Identities = 126/476 (26%), Positives = 226/476 (47%), Gaps = 62/476 (13%)
 Frame = -3

Query: 1247 KIHSWVFKLGYCLDLFVGSSLLHMYSRFGFMGDGRRVFDEMSVRDLGTWNAMISGFCQNG 1068
            K+H+ +   G   ++ + + L+++Y   G +   R  FD +  +++ +WN++IS + + G
Sbjct: 40   KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFG 99

Query: 1067 KAVEALDVFRE---MCMEG-VKMDSMTVSSILPVCAPLNDLDTGMFAHVYVIKNGLEFDV 900
            K  EA++   +   MC  G ++ D  T   IL  C  L D   G   H  V K G E DV
Sbjct: 100  KYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDV 156

Query: 899  YVSNALINMYAKFGMLELARSIFYQMMVRDLVSWNSLIAAYEQNSDPITALGYFVEMKRN 720
            +V+ +L+++Y+++G+L++A  +F  M V+D+ SWN++I+ + QN +   ALG    MK  
Sbjct: 157  FVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGE 216

Query: 719  GFQPDILTFVSLASIVAQSGDAENSKSVN-------------------------GLASEA 615
            G + D +T  S+  + AQS D  N   ++                         G   +A
Sbjct: 217  GVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDA 276

Query: 614  MEVYKTMRECEM------------------------------IVPTQGTLVSILPAYSHV 525
              V+  M   ++                              I P   T+VS+   +S +
Sbjct: 277  QMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQL 336

Query: 524  GALRQGMKVHGHTVKIGLL-SDIYVGTCLIDVYAKCGRLNDAMLLFKQVPRKSSVPWNAI 348
               R    + G  ++   L  D+ +G  L+++YAK G +N A  +F Q+PRK ++ WN +
Sbjct: 337  SDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTL 396

Query: 347  ISGHGIHGQGEKSLSLFGEMEE-EGVKPDHVTFVSLLSACSHAGLIDQGQQCF-KLMQEK 174
            ++G+  +G   +++  +  MEE     P+  T+VS++ A SH G + QG +   KL++  
Sbjct: 397  VTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNS 456

Query: 173  YCIQPGLKHFGCIVDLLGRAGHLDMAYDFIKNMPVRPDASVWGALLGACRIHGNVE 6
              +   +    C++DL G+ G L+ A      +P R  +  W A++ +  IHG  E
Sbjct: 457  LYLDVFVA--TCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIHGRGE 509