BLASTX nr result

ID: Coptis23_contig00027962 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027962
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002533661.1| hypothetical protein RCOM_0152200 [Ricinus c...    70   1e-10
emb|CBI40233.3| unnamed protein product [Vitis vinifera]               64   2e-08
ref|XP_004172802.1| PREDICTED: uncharacterized LOC101207733, par...    55   5e-06
ref|XP_004140985.1| PREDICTED: uncharacterized protein LOC101207...    55   5e-06

>ref|XP_002533661.1| hypothetical protein RCOM_0152200 [Ricinus communis]
           gi|223526443|gb|EEF28720.1| hypothetical protein
           RCOM_0152200 [Ricinus communis]
          Length = 665

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 26/136 (19%)
 Frame = -3

Query: 382 MNIPNGCAGLFRVPTDLRSEATPKANILLSHFGSKTSLTSKYPNVGV--ARSDPYSSSPY 209
           + IP GC GLFR+PTD   E   +AN+L S   ++ SL + Y + GV  A S+ + +SPY
Sbjct: 506 VQIPVGCVGLFRLPTDFSVEGNTRANLLSS--SAQLSLGNHYSDRGVPAAASNQFVASPY 563

Query: 208 LEMYS----RDSFL--------------KPYFDPLMDAELAVSSSRFNY-HLP-----QE 101
           L+  S     D FL              KPYFDP +D  L  SSSR+ Y + P      +
Sbjct: 564 LQGRSSSSTEDQFLSSQYVGGGSRIPTPKPYFDPYLDTGLP-SSSRYTYPNYPINTSYPD 622

Query: 100 LMPRVPCNDGMVKTFP 53
           LMPR+P  +G +   P
Sbjct: 623 LMPRIPSREGSLAPVP 638


>emb|CBI40233.3| unnamed protein product [Vitis vinifera]
          Length = 682

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 49/147 (33%), Positives = 68/147 (46%), Gaps = 22/147 (14%)
 Frame = -3

Query: 382 MNIPNGCAGLFRVPTDLRSEATPKANILLSHFGSKTSLTSKYPNVG-------------- 245
           + IP GCAGLFRVP D +     +AN L S   S++SL + YP+ G              
Sbjct: 528 VEIPVGCAGLFRVPADYQLGTATEANFLGS--DSQSSLKNYYPDTGFVANPGDRFLTSPY 585

Query: 244 ------VARSDPYSSSPYLEMYSRDSFLKPYFDPLMDAELAVSS--SRFNYHLPQELMPR 89
                 V   D + +SPY E  SR   L+P FD   DA L+ S+  +   Y    +L+ R
Sbjct: 586 LKTGSSVPTDDSFLTSPYRETGSRIPPLRPSFDYYSDAGLSASTRYTHPTYSSHPDLLYR 645

Query: 88  VPCNDGMVKTFPSIRPEALSGDHSSIY 8
           +P N+G  +   +      S DH S Y
Sbjct: 646 MPFNEGFARPPRNSEVGIPSTDHFSFY 672


>ref|XP_004172802.1| PREDICTED: uncharacterized LOC101207733, partial [Cucumis sativus]
          Length = 477

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 47/161 (29%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
 Frame = -3

Query: 382 MNIPNGCAGLFRVPTDLRSEATPKANILLSHFGSKTSLTSKYPNVGVARSDPYSSSPYLE 203
           + IP GCAGLFR+PTD  +EA+ +AN L S   S+    + YP  G A S  +   P  E
Sbjct: 311 LEIPVGCAGLFRLPTDFAAEASSQANFLAS--SSQLRSPAHYPGEGAALSANHQIFPGHE 368

Query: 202 MYSRDSFL------------------------------------KPYFDPLMDAELAVSS 131
           M  R SFL                                    K +FD   DA     S
Sbjct: 369 MEDRSSFLRDSRLRSSGYRAGSGFTRDGFLTDHIPENRWKNPGQKHHFDQYFDA--VQPS 426

Query: 130 SRFNYHLPQELMPRVPCNDGMVKTFPSIRPEALSGDHSSIY 8
           S  + + P+ +   +  ND  ++TFP    E    +  S Y
Sbjct: 427 SYVHNYPPRPVSSNIHPNDTFLRTFPGRSTEMPPTNQYSFY 467


>ref|XP_004140985.1| PREDICTED: uncharacterized protein LOC101207733 [Cucumis sativus]
          Length = 671

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 47/161 (29%), Positives = 64/161 (39%), Gaps = 36/161 (22%)
 Frame = -3

Query: 382 MNIPNGCAGLFRVPTDLRSEATPKANILLSHFGSKTSLTSKYPNVGVARSDPYSSSPYLE 203
           + IP GCAGLFR+PTD  +EA+ +AN L S   S+    + YP  G A S  +   P  E
Sbjct: 505 LEIPVGCAGLFRLPTDFAAEASSQANFLAS--SSQLRSPTHYPGEGAALSANHQIFPGHE 562

Query: 202 MYSRDSFL------------------------------------KPYFDPLMDAELAVSS 131
           M  R SFL                                    K +FD   DA     S
Sbjct: 563 MEDRSSFLRDSRLRSSGYRAGSGFTRDGFLTDHIPENRWKNPGQKHHFDQYFDA--VQPS 620

Query: 130 SRFNYHLPQELMPRVPCNDGMVKTFPSIRPEALSGDHSSIY 8
           S  + + P+ +   +  ND  ++TFP    E    +  S Y
Sbjct: 621 SYVHNYPPRPVSSNIHPNDTFLRTFPGRSTEMPPTNQYSFY 661


Top