BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027941
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    56   7e-07
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...    56   7e-07

>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E
           subunit 1-like [Cucumis sativus]
          Length = 2019

 Score = 56.2 bits (134), Expect(2) = 7e-07
 Identities = 28/69 (40%), Positives = 46/69 (66%)
 Frame = +1

Query: 157 VEAPVVISFPKLSGLGNLMNFKCNSSINIVVEQIGLLGIQLTF*GKVYLRNLVKDMTSLF 336
           V+ P      KLS LG L + K  S+IN VV+QIG LG+QL+  G+ Y ++L++D+ SLF
Sbjct: 697 VKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLF 756

Query: 337 FVKFAANGV 363
             +++++ +
Sbjct: 757 HNRYSSDKI 765



 Score = 21.6 bits (44), Expect(2) = 7e-07
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 98  RCRYSELVELQLES 139
           R  ++ELVELQLE+
Sbjct: 679 RSTFNELVELQLEN 692


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
           sativus]
          Length = 1959

 Score = 56.2 bits (134), Expect(2) = 7e-07
 Identities = 28/69 (40%), Positives = 46/69 (66%)
 Frame = +1

Query: 157 VEAPVVISFPKLSGLGNLMNFKCNSSINIVVEQIGLLGIQLTF*GKVYLRNLVKDMTSLF 336
           V+ P      KLS LG L + K  S+IN VV+QIG LG+QL+  G+ Y ++L++D+ SLF
Sbjct: 667 VKVPFTNFILKLSSLGKLFDSKSESAINKVVQQIGFLGLQLSDKGRFYSKSLIEDVASLF 726

Query: 337 FVKFAANGV 363
             +++++ +
Sbjct: 727 HNRYSSDKI 735



 Score = 21.6 bits (44), Expect(2) = 7e-07
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 98  RCRYSELVELQLES 139
           R  ++ELVELQLE+
Sbjct: 649 RSTFNELVELQLEN 662