BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027907
         (465 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containi...   179   3e-43
ref|XP_002324029.1| predicted protein [Populus trichocarpa] gi|2...   177   6e-43
ref|XP_002870737.1| pentatricopeptide repeat-containing protein ...   176   2e-42
ref|XP_002517447.1| pentatricopeptide repeat-containing protein,...   175   3e-42
dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]           174   9e-42

>ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
           chloroplastic [Vitis vinifera]
           gi|296087770|emb|CBI35026.3| unnamed protein product
           [Vitis vinifera]
          Length = 675

 Score =  179 bits (453), Expect = 3e-43
 Identities = 88/130 (67%), Positives = 110/130 (84%)
 Frame = -3

Query: 463 MIDLLSRNKKHAGVVEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEER 284
           MIDL SRN+KH  V+EVF+KMR AGYFPD+  I+ VLNA GKLREFEKA+ IYKEM+EE 
Sbjct: 542 MIDLFSRNRKHTNVIEVFDKMRGAGYFPDSNVIALVLNACGKLREFEKADAIYKEMEEEG 601

Query: 283 CVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVERRKKRLDDA 104
           CVF DE+HFQMLSLYGA+G+ + V+ LF+RL+SDPN+NK+EL+LVV+SI E R  RL+DA
Sbjct: 602 CVFSDEVHFQMLSLYGARGDFQMVDSLFERLDSDPNINKKELHLVVASIYE-RANRLNDA 660

Query: 103 SRISSQRRER 74
           S+I ++ RER
Sbjct: 661 SQIMNRMRER 670


>ref|XP_002324029.1| predicted protein [Populus trichocarpa] gi|222867031|gb|EEF04162.1|
           predicted protein [Populus trichocarpa]
          Length = 629

 Score =  177 bits (450), Expect = 6e-43
 Identities = 87/126 (69%), Positives = 107/126 (84%)
 Frame = -3

Query: 463 MIDLLSRNKKHAGVVEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEER 284
           M+DL SRN+K A V+EVFEKMR AGYFPD+  I+ VLNAYGKL EFEKA+ +YKEMQEE 
Sbjct: 494 MVDLFSRNRKPANVIEVFEKMRGAGYFPDSNVIALVLNAYGKLHEFEKADALYKEMQEEE 553

Query: 283 CVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVERRKKRLDDA 104
           CVFPDE+HFQMLSLYGA+ +   +E LF+RL+SDPN+NK+EL+LVV+SI E RK RL+DA
Sbjct: 554 CVFPDEVHFQMLSLYGARKDFMMIEALFERLDSDPNINKKELHLVVASIYE-RKNRLNDA 612

Query: 103 SRISSQ 86
           SRI ++
Sbjct: 613 SRIMNR 618


>ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297316573|gb|EFH46996.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 680

 Score =  176 bits (445), Expect = 2e-42
 Identities = 85/135 (62%), Positives = 112/135 (82%)
 Frame = -3

Query: 463 MIDLLSRNKKHAGVVEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEER 284
           MI+L SRN+++  V+EVFEKMR AGYFPD+ +I+ VLNAYGK REFEKA+ +Y+EMQEE 
Sbjct: 544 MINLYSRNQRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQREFEKADTVYREMQEEG 603

Query: 283 CVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVERRKKRLDDA 104
           CVFPDE+HFQMLSLY ++ + E VE LF+RLESDPNVN +EL+LVV+++ ER  K L+DA
Sbjct: 604 CVFPDEVHFQMLSLYSSKKDFEMVESLFERLESDPNVNSKELHLVVAALYERADK-LNDA 662

Query: 103 SRISSQRRERLLAEP 59
           SR+ ++ RER + +P
Sbjct: 663 SRVMNRMRERGILKP 677


>ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543458|gb|EEF44989.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 654

 Score =  175 bits (444), Expect = 3e-42
 Identities = 87/126 (69%), Positives = 108/126 (85%)
 Frame = -3

Query: 463 MIDLLSRNKKHAGVVEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEER 284
           MI+L SRNK+ A VVEVFEKMR AGYFPD+  I+ VLNAYGKLREFEKA+ +Y+EMQEE 
Sbjct: 521 MIELFSRNKRPANVVEVFEKMRGAGYFPDSDVIALVLNAYGKLREFEKADAVYREMQEEE 580

Query: 283 CVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVERRKKRLDDA 104
           CVFPDE+HFQMLSLYGA+ +   VE LF++L+SDPN+NK+EL+LVV+SI E R+ RL+DA
Sbjct: 581 CVFPDEVHFQMLSLYGARKDFIMVESLFEKLDSDPNINKKELHLVVASIYE-RQNRLNDA 639

Query: 103 SRISSQ 86
           SRI ++
Sbjct: 640 SRIMNR 645


>dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
          Length = 546

 Score =  174 bits (440), Expect = 9e-42
 Identities = 85/135 (62%), Positives = 110/135 (81%)
 Frame = -3

Query: 463 MIDLLSRNKKHAGVVEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEER 284
           MI+L SRN+++  V+EVFEKMR AGYFPD+  I+ VLNAYGK REFEKA+ +Y+EMQEE 
Sbjct: 410 MINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEG 469

Query: 283 CVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVERRKKRLDDA 104
           CVFPDE+HFQMLSLY ++ + E VE LF RLESDPNVN +EL+LVV+++ ER  K L+DA
Sbjct: 470 CVFPDEVHFQMLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYERADK-LNDA 528

Query: 103 SRISSQRRERLLAEP 59
           SR+ ++ RER + +P
Sbjct: 529 SRVMNRMRERGILKP 543