BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027885
         (436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323570.1| predicted protein [Populus trichocarpa] gi|2...   174   5e-42
ref|XP_002528114.1| double-stranded RNA binding protein, putativ...   169   2e-40
ref|XP_002274594.2| PREDICTED: LOW QUALITY PROTEIN: RNA polymera...   164   7e-39
emb|CBI30403.3| unnamed protein product [Vitis vinifera]              164   7e-39
ref|XP_004167060.1| PREDICTED: RNA polymerase II C-terminal doma...   163   1e-38

>ref|XP_002323570.1| predicted protein [Populus trichocarpa] gi|222868200|gb|EEF05331.1|
           predicted protein [Populus trichocarpa]
          Length = 563

 Score =  174 bits (442), Expect = 5e-42
 Identities = 81/131 (61%), Positives = 108/131 (82%), Gaps = 2/131 (1%)
 Frame = +3

Query: 48  GLKTAVFHGDLYLGEVEIFSTTNN-FQFPNNELRINHISSLSERCPPLSILQTISPFSIV 224
           G K+ V+HG++ LGE+++   T   F FPNNE+RI+HIS  SERCPPLSILQTISPFS+ 
Sbjct: 5   GFKSPVYHGEVCLGELDVIPVTEKGFLFPNNEIRIHHISQQSERCPPLSILQTISPFSVR 64

Query: 225 CKIKSTSN-EKSHFNSLYISCLNDLKTAVVMLGGEELHLVAMPSKIEKLPCFWCCSVPLG 401
           CK++S+S  E+SH  +L+ SC +++KTAVV++G EE+HLVAMPSK +K PCFWC +VP+G
Sbjct: 65  CKLESSSPMEQSHLINLHASCFHEVKTAVVLIGDEEIHLVAMPSKQKKFPCFWCFAVPVG 124

Query: 402 LYESCLRMLNL 434
           LY+SCLRMLN+
Sbjct: 125 LYDSCLRMLNM 135


>ref|XP_002528114.1| double-stranded RNA binding protein, putative [Ricinus communis]
           gi|223532503|gb|EEF34293.1| double-stranded RNA binding
           protein, putative [Ricinus communis]
          Length = 786

 Score =  169 bits (429), Expect = 2e-40
 Identities = 83/131 (63%), Positives = 101/131 (77%), Gaps = 2/131 (1%)
 Frame = +3

Query: 48  GLKTAVFHGDLYLGEVEIFSTTN-NFQFPNNELRINHISSLSERCPPLSILQTISPFSIV 224
           G K+ VFHG+L LGE++    T+ NFQFPNNE+RIN IS   ERCPPLSILQTIS FS+ 
Sbjct: 5   GFKSKVFHGELLLGELDAIPVTDQNFQFPNNEIRINRISQSGERCPPLSILQTISSFSVR 64

Query: 225 CKIKSTSN-EKSHFNSLYISCLNDLKTAVVMLGGEELHLVAMPSKIEKLPCFWCCSVPLG 401
           CK++S+S  E+ H  +L+ SC  + KTAVV +G EE+HLVAMPSK +K PCFWC  VPLG
Sbjct: 65  CKLESSSPIEQPHLINLHASCFYEFKTAVVSIGNEEIHLVAMPSKQKKFPCFWCFPVPLG 124

Query: 402 LYESCLRMLNL 434
           LY+SCL MLNL
Sbjct: 125 LYDSCLGMLNL 135


>ref|XP_002274594.2| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain
           phosphatase-like 2-like [Vitis vinifera]
          Length = 789

 Score =  164 bits (415), Expect = 7e-39
 Identities = 79/131 (60%), Positives = 104/131 (79%), Gaps = 2/131 (1%)
 Frame = +3

Query: 48  GLKTAVFHGDLYLGEVEIFSTTN-NFQFPNNELRINHISSLSERCPPLSILQTISPFSIV 224
           G K+ V+HGDL+LGE++     + +FQFPNNE+R++HIS +SERCPPLSIL TIS FS+ 
Sbjct: 5   GFKSLVYHGDLFLGELDAIPVKDQSFQFPNNEIRVHHISPISERCPPLSILHTISSFSVR 64

Query: 225 CKIKSTSN-EKSHFNSLYISCLNDLKTAVVMLGGEELHLVAMPSKIEKLPCFWCCSVPLG 401
           CK++S+S  ++ +  +L+ SC ++LKTAVV++G EELHLVAMPSK +K PCFWC SVP G
Sbjct: 65  CKLESSSPIQQPNLINLHASCFHELKTAVVLIGDEELHLVAMPSKQKKFPCFWCYSVPCG 124

Query: 402 LYESCLRMLNL 434
           LY S L MLNL
Sbjct: 125 LYSSSLWMLNL 135


>emb|CBI30403.3| unnamed protein product [Vitis vinifera]
          Length = 853

 Score =  164 bits (415), Expect = 7e-39
 Identities = 79/131 (60%), Positives = 104/131 (79%), Gaps = 2/131 (1%)
 Frame = +3

Query: 48  GLKTAVFHGDLYLGEVEIFSTTN-NFQFPNNELRINHISSLSERCPPLSILQTISPFSIV 224
           G K+ V+HGDL+LGE++     + +FQFPNNE+R++HIS +SERCPPLSIL TIS FS+ 
Sbjct: 5   GFKSLVYHGDLFLGELDAIPVKDQSFQFPNNEIRVHHISPISERCPPLSILHTISSFSVR 64

Query: 225 CKIKSTSN-EKSHFNSLYISCLNDLKTAVVMLGGEELHLVAMPSKIEKLPCFWCCSVPLG 401
           CK++S+S  ++ +  +L+ SC ++LKTAVV++G EELHLVAMPSK +K PCFWC SVP G
Sbjct: 65  CKLESSSPIQQPNLINLHASCFHELKTAVVLIGDEELHLVAMPSKQKKFPCFWCYSVPCG 124

Query: 402 LYESCLRMLNL 434
           LY S L MLNL
Sbjct: 125 LYSSSLWMLNL 135


>ref|XP_004167060.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
           2-like [Cucumis sativus]
          Length = 837

 Score =  163 bits (413), Expect = 1e-38
 Identities = 80/131 (61%), Positives = 102/131 (77%), Gaps = 2/131 (1%)
 Frame = +3

Query: 48  GLKTAVFHGDLYLGEVE-IFSTTNNFQFPNNELRINHISSLSERCPPLSILQTISPFSIV 224
           G K+ VFHGD+ LGE++ I +T  NFQFPNNE+RI+ IS  SERCPPLS+LQTIS FS+ 
Sbjct: 5   GFKSVVFHGDVRLGELDAIPATDQNFQFPNNEIRIHRISPPSERCPPLSVLQTISSFSLR 64

Query: 225 CKIKSTSN-EKSHFNSLYISCLNDLKTAVVMLGGEELHLVAMPSKIEKLPCFWCCSVPLG 401
           CK++S+   E+ H   L+ SC ++LKTA+V++G EE+HLVAMPSK +  PCFWC +VP G
Sbjct: 65  CKLQSSLPVEQPHLIQLHYSCFHELKTAIVLVGDEEIHLVAMPSKQKNFPCFWCFAVPCG 124

Query: 402 LYESCLRMLNL 434
           LY SCL MLNL
Sbjct: 125 LYLSCLGMLNL 135