BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027878
         (701 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE80133.2| Polynucleotidyl transferase, Ribonuclease H fold ...    60   3e-07
ref|XP_003544251.1| PREDICTED: uncharacterized protein LOC100787...    60   4e-07
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    60   4e-07
ref|XP_002285633.1| PREDICTED: uncharacterized protein LOC100264...    58   2e-06
emb|CAN72157.1| hypothetical protein VITISV_019020 [Vitis vinifera]    58   2e-06

>gb|ABE80133.2| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
           truncatula]
          Length = 282

 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 3/162 (1%)
 Frame = +2

Query: 149 VEILKTYVCATVSHLWNERNHRIFE-NTSKPSSIVKENLIKEMKIYLQSQVKDVQDTIKG 325
           V   +T    T  +LWN RN  IFE    +PS+           + +Q   ++++D  K 
Sbjct: 116 VHATQTNFTTTCWYLWNWRNKSIFEIGFQRPSNPT---------LVIQKFTREIEDNTKL 166

Query: 326 RILMERVGIRVNFKRKEPTPCSWIKPTGNAVKLNSDGAMNDSTT--GIGGAIRDADGEIL 499
                   +  +  +KE     W++P    VKLN DGA   S T  G GG +RD+DG  +
Sbjct: 167 --------VHKSSHQKETIYIGWMRPPFGWVKLNCDGAWKASGTFAGCGGLLRDSDGRWI 218

Query: 500 LAYTGEGGMRSVLYQELQGILYGLQGCTLLGKKEIVATSDSQ 625
             Y  + GM    + E+ G+  GL          ++  SDS+
Sbjct: 219 KGYFKKIGMCDAFHAEMWGMYLGLDMAWRENTTHLIVDSDSK 260


>ref|XP_003544251.1| PREDICTED: uncharacterized protein LOC100787629 [Glycine max]
          Length = 470

 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
 Frame = +2

Query: 266 KEMKIYLQSQVKDVQDTIKGRILME---RVGIRVNFKRKEPTPCSWIKPTGNAVKLNSDG 436
           K+ +  L+ +    Q  IKG +L+    ++   +N   +    C W KP     KLN+DG
Sbjct: 263 KDKENELRVEFSSTQKRIKGMVLLRNLNQIASILNPVSRSIRWCEWTKPEFGWTKLNTDG 322

Query: 437 AMNDSTTGIGGAIRDADGEILLAYTGEGGMRSVLYQELQGILYGLQGCTLLGKKEIVATS 616
           +++ +T   GG +RD  GE + A+  +     V   EL  I  GL     LG K I   S
Sbjct: 323 SIHSNTVSFGGLLRDYRGEPICAFVSKAPQGDVFLAELWAIWRGLVLSLGLGIKAIWVES 382

Query: 617 DSQSAI 634
           DS S +
Sbjct: 383 DSMSVV 388


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 729

 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
 Frame = +2

Query: 161 KTYVCATVSHLWNERNHRIFE-NTSKPSSIVKENLIKEMKIYLQSQVKDVQDTIKGRILM 337
           +T    T  +LWN RN  IFE    +PS+           + +Q   ++++D  K     
Sbjct: 567 QTTFMTTCWYLWNWRNKSIFEIGFQRPSNPT---------LVIQKFTREIEDNTKL---- 613

Query: 338 ERVGIRVNFKRKEPTPCSWIKPTGNAVKLNSDGAMNDSTT--GIGGAIRDADGEILLAYT 511
               +  +  +KE     W++P    VKLN DGA   S T  G GG +RD+DG  +  Y 
Sbjct: 614 ----VHKSSHQKETIYIGWMRPPFGWVKLNCDGAWKGSGTLAGCGGLLRDSDGRWIKGYF 669

Query: 512 GEGGMRSVLYQELQGILYGLQGCTLLGKKEIVATSDSQ 625
            + GM    + E+ G+  GL          ++  SDS+
Sbjct: 670 KKIGMCDAFHAEMWGMYLGLDMAWRENTTHLIVESDSK 707


>ref|XP_002285633.1| PREDICTED: uncharacterized protein LOC100264337 [Vitis vinifera]
          Length = 431

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 32/90 (35%), Positives = 45/90 (50%)
 Frame = +2

Query: 389 SWIKPTGNAVKLNSDGAMNDSTTGIGGAIRDADGEILLAYTGEGGMRSVLYQELQGILYG 568
           SW KP     KLN+DG+++    G GG  RD +G+ + AY  +     +   EL  I  G
Sbjct: 267 SWEKPEFGWTKLNTDGSIDRGNAGFGGLFRDHNGDPICAYASKAHQNDIFLVELWAIWRG 326

Query: 569 LQGCTLLGKKEIVATSDSQSAINILKGTKP 658
           L   + LG K I   SDS SA+  +   +P
Sbjct: 327 LVLASGLGIKAIWVESDSMSAVKTINRKQP 356


>emb|CAN72157.1| hypothetical protein VITISV_019020 [Vitis vinifera]
          Length = 318

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
 Frame = +2

Query: 389 SWIKPTGNAVKLNSDGAMNDSTTGIGGAIRDADGEILLAYTGEGGMRSVLYQELQGILYG 568
           SW KP     KLN+DG+++    G GG  RD +G+ + AY  +     +   EL  I  G
Sbjct: 154 SWEKPEFGWTKLNTDGSIDRGNAGFGGLFRDHNGDPICAYASKAHQNDIFLVELWAIWRG 213

Query: 569 LQGCTLLGKKEIVATSDSQSAINILKGTKP---PPWDCINTVLAIKG 700
           L   + LG K I   SDS S +  +   +P       C+N +  + G
Sbjct: 214 LVLASGLGIKAIWVESDSMSVVKTINRKQPYSSRAGSCLNHIWVLLG 260