BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027801
         (751 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E sub...    53   2e-08
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...    52   3e-08
ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...    52   4e-08
gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japo...    52   7e-08
gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indi...    52   7e-08

>ref|XP_003577164.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like
           [Brachypodium distachyon]
          Length = 1935

 Score = 53.1 bits (126), Expect(2) = 2e-08
 Identities = 25/32 (78%), Positives = 28/32 (87%)
 Frame = +2

Query: 605 LNPYEDLVHSIFSRELLVRSSRGLTASGTLFK 700
           LNPYE+LVHSI +RE +VRSSRGLT  GTLFK
Sbjct: 737 LNPYEELVHSISTREAIVRSSRGLTEPGTLFK 768



 Score = 31.6 bits (70), Expect(2) = 2e-08
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 693 YSN*MTVLRDVVPCYDGTV 749
           + N M +LRDVV CYDGTV
Sbjct: 767 FKNLMAILRDVVICYDGTV 785


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score = 52.0 bits (123), Expect(2) = 3e-08
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +2

Query: 590 CFIMVLNPYEDLVHSIFSRELLVRSSRGLTASGTLFK 700
           CF   L+PYE++VHSI +RE++VRSS+GL   GTLFK
Sbjct: 548 CFFHGLDPYEEIVHSIATREVIVRSSKGLAEPGTLFK 584



 Score = 32.0 bits (71), Expect(2) = 3e-08
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = +3

Query: 693 YSN*MTVLRDVVPCYDGTV 749
           + N M VLRDVV CYDGTV
Sbjct: 583 FKNLMAVLRDVVICYDGTV 601


>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
           gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
           subunit [Medicago truncatula]
          Length = 2032

 Score = 52.0 bits (123), Expect(2) = 4e-08
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = +2

Query: 590 CFIMVLNPYEDLVHSIFSRELLVRSSRGLTASGTLFK 700
           CF   L+PYE+LVHSI +RE++ RSSRGL+  GTLFK
Sbjct: 834 CFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFK 870



 Score = 31.6 bits (70), Expect(2) = 4e-08
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 693 YSN*MTVLRDVVPCYDGTV 749
           + N M +LRDVV CYDGTV
Sbjct: 869 FKNLMAILRDVVICYDGTV 887


>gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
          Length = 2017

 Score = 52.0 bits (123), Expect(2) = 7e-08
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = +2

Query: 605 LNPYEDLVHSIFSRELLVRSSRGLTASGTLFK 700
           LNPYE+LVH+I +RE +VRSSRGLT  GTLFK
Sbjct: 756 LNPYEELVHAISTREAIVRSSRGLTEPGTLFK 787



 Score = 30.8 bits (68), Expect(2) = 7e-08
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 693 YSN*MTVLRDVVPCYDGTV 749
           + N M +LRDVV CYDGTV
Sbjct: 786 FKNLMALLRDVVICYDGTV 804


>gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indica Group]
          Length = 1867

 Score = 52.0 bits (123), Expect(2) = 7e-08
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = +2

Query: 605 LNPYEDLVHSIFSRELLVRSSRGLTASGTLFK 700
           LNPYE+LVH+I +RE +VRSSRGLT  GTLFK
Sbjct: 756 LNPYEELVHAISTREAIVRSSRGLTEPGTLFK 787



 Score = 30.8 bits (68), Expect(2) = 7e-08
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 693 YSN*MTVLRDVVPCYDGTV 749
           + N M +LRDVV CYDGTV
Sbjct: 786 FKNLMALLRDVVICYDGTV 804