BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027791
         (426 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_001778736.1| predicted protein [Physcomitrella patens sub...    66   3e-09
ref|XP_003576379.1| PREDICTED: DNA topoisomerase 6 subunit B-lik...    62   5e-08
emb|CAE47077.1| putative topoisomerase VI subunit B [Oryza sativ...    62   6e-08
ref|NP_001062761.1| Os09g0279600 [Oryza sativa Japonica Group] g...    62   6e-08
ref|XP_002981289.1| hypothetical protein SELMODRAFT_154417 [Sela...    62   6e-08

>ref|XP_001778736.1| predicted protein [Physcomitrella patens subsp. patens]
           gi|162669855|gb|EDQ56434.1| predicted protein
           [Physcomitrella patens subsp. patens]
          Length = 677

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
 Frame = -3

Query: 352 PDGDYLWQV-LSLELNPDIMTTCAGR----HGDNVINLQVGLAFWRKSREPGVKIFRLLE 188
           P G+Y  ++ +  ELNPD++ T  G      G   I ++ G++   K  +PG+ IFR   
Sbjct: 411 PAGEYNLRLGIMKELNPDLVATYEGSAQVFEGHPFI-VEAGVSLGGKDVKPGINIFRFAN 469

Query: 187 TSPLCYEEGADEETIFALKRIKWEDYNVNVQRDRVCLFVKATELENYVKRTQKRII 20
             PL +E+G D  T  A+KRI W  Y +N Q+D++ +FV     +   K T K  I
Sbjct: 470 RIPLLFEQGGDVVTRTAMKRINWGSYKINQQQDKIGVFVSIVSTKIPFKGTGKEYI 525


>ref|XP_003576379.1| PREDICTED: DNA topoisomerase 6 subunit B-like [Brachypodium
           distachyon]
          Length = 688

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
 Frame = -3

Query: 352 PDGDYLWQV-LSLELNPDIMTTCAGR----HGDNVINLQVGLAFWRKSREPGVKIFRLLE 188
           P G+Y  ++ +  EL+PD++ T A       G   I ++ G++   K  + G+ IFR   
Sbjct: 424 PAGEYNLRLGIIKELHPDLVATHASSPQVFEGHPFI-VEAGVSIGGKDVKQGLNIFRFAN 482

Query: 187 TSPLCYEEGADEETIFALKRIKWEDYNVNVQRDRVCLFVKATELENYVKRTQKRII 20
             PL +E+GAD  T  ALKRI W  Y +N Q+D++ +FV     +   K T K  I
Sbjct: 483 RIPLLFEQGADVITRTALKRINWSSYKINQQQDKIGVFVSIVSTKIPFKGTGKEYI 538


>emb|CAE47077.1| putative topoisomerase VI subunit B [Oryza sativa Indica Group]
          Length = 696

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
 Frame = -3

Query: 352 PDGDYLWQV-LSLELNPDIMTTCAGR----HGDNVINLQVGLAFWRKSREPGVKIFRLLE 188
           P G+Y  ++ +  EL+PD++ T A       G   I ++ G++   K  + G+ IFR   
Sbjct: 432 PAGEYNLRLGIIKELHPDLVATHASSPQVFEGHPFI-VEAGISIGGKDVKHGLNIFRYAN 490

Query: 187 TSPLCYEEGADEETIFALKRIKWEDYNVNVQRDRVCLFVKATELENYVKRTQKRII 20
             PL +E+GAD  T  ALKRI W  Y +N Q+D++ +FV     +   K T K  I
Sbjct: 491 RIPLLFEQGADVITRTALKRINWSSYKINQQQDKIGVFVSIVSTKIPFKGTGKEYI 546


>ref|NP_001062761.1| Os09g0279600 [Oryza sativa Japonica Group]
           gi|49387842|dbj|BAD26507.1| putative topoisomerase 6
           subunit B [Oryza sativa Japonica Group]
           gi|113630994|dbj|BAF24675.1| Os09g0279600 [Oryza sativa
           Japonica Group] gi|222641206|gb|EEE69338.1| hypothetical
           protein OsJ_28656 [Oryza sativa Japonica Group]
          Length = 696

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
 Frame = -3

Query: 352 PDGDYLWQV-LSLELNPDIMTTCAGR----HGDNVINLQVGLAFWRKSREPGVKIFRLLE 188
           P G+Y  ++ +  EL+PD++ T A       G   I ++ G++   K  + G+ IFR   
Sbjct: 432 PAGEYNLRLGIIKELHPDLVATHASSPQVFEGHPFI-VEAGISIGGKDVKHGLNIFRYAN 490

Query: 187 TSPLCYEEGADEETIFALKRIKWEDYNVNVQRDRVCLFVKATELENYVKRTQKRII 20
             PL +E+GAD  T  ALKRI W  Y +N Q+D++ +FV     +   K T K  I
Sbjct: 491 RIPLLFEQGADVITRTALKRINWSSYKINQQQDKIGVFVSIVSTKIPFKGTGKEYI 546


>ref|XP_002981289.1| hypothetical protein SELMODRAFT_154417 [Selaginella moellendorffii]
           gi|300150829|gb|EFJ17477.1| hypothetical protein
           SELMODRAFT_154417 [Selaginella moellendorffii]
          Length = 578

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
 Frame = -3

Query: 352 PDGDYLWQV-LSLELNPDIMTTCAGR----HGDNVINLQVGLAFWRKSREPGVKIFRLLE 188
           P G+Y  ++ ++ EL+PD++ TC G      G   I ++  ++   KS +PG+ IFR   
Sbjct: 314 PAGEYNLRLGITKELHPDMVATCQGNVQVFEGHPFI-VEAAVSLGGKSVKPGLNIFRFAN 372

Query: 187 TSPLCYEEGADEETIFALKRIKWEDYNVNVQRDRVCLFVKATELENYVKRTQKRII 20
             PL +E+G D  T  A KRI W  Y ++  +D+V +FV     +   K T K  I
Sbjct: 373 RIPLLFEQGGDVITRTATKRISWSAYKISHLQDKVGVFVSIVSTKIPFKGTGKEYI 428