BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027716
         (460 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    72   5e-16
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    68   9e-15
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    68   4e-14
ref|XP_003530391.1| PREDICTED: uncharacterized protein LOC100804...    62   7e-13
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]              66   1e-12

>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 71.6 bits (174), Expect(2) = 5e-16
 Identities = 31/66 (46%), Positives = 44/66 (66%)
 Frame = -1

Query: 349 LIDRLDQLNRNFWWHGTMHSNSTHTMNWDKLCSPKDKGRLGFREAKGMNQALIAKLCWSL 170
           +++RLDQL+R F W  T      H + W K+CSPK +G LG R AK MN+ALI+K+ W L
Sbjct: 62  ILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRL 121

Query: 169 TVDESS 152
             +++S
Sbjct: 122 LQEKNS 127



 Score = 37.4 bits (85), Expect(2) = 5e-16
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -3

Query: 458 WRAKVLSQASRTTLVKTLS*AVPVYTISAFVLPAKVIN 345
           WR K LS A R TL K +  ++PV+++S  +LP  ++N
Sbjct: 27  WREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILN 64


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 68.2 bits (165), Expect(2) = 9e-15
 Identities = 29/66 (43%), Positives = 44/66 (66%)
 Frame = -1

Query: 349 LIDRLDQLNRNFWWHGTMHSNSTHTMNWDKLCSPKDKGRLGFREAKGMNQALIAKLCWSL 170
           L+++LD+++RNF W  T+     H ++W K+C PK  G LG R +K MN+AL+AK+ W L
Sbjct: 612 LLEQLDKVSRNFLWGSTVEKRKQHLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRL 671

Query: 169 TVDESS 152
             D+ S
Sbjct: 672 LNDKVS 677



 Score = 36.6 bits (83), Expect(2) = 9e-15
 Identities = 14/37 (37%), Positives = 27/37 (72%)
 Frame = -3

Query: 458 WRAKVLSQASRTTLVKTLS*AVPVYTISAFVLPAKVI 348
           W+++ LS A R TL K +  ++P++T+S+ +LPA ++
Sbjct: 577 WKSRSLSLAGRITLTKAVLMSIPIHTMSSILLPASLL 613


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 68.2 bits (165), Expect(2) = 4e-14
 Identities = 28/65 (43%), Positives = 41/65 (63%)
 Frame = -1

Query: 346 IDRLDQLNRNFWWHGTMHSNSTHTMNWDKLCSPKDKGRLGFREAKGMNQALIAKLCWSLT 167
           +D LD+ +R F W  TM     H ++W K+C PK +G +G R A+ MN+AL+AK+ W L 
Sbjct: 678 LDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLL 737

Query: 166 VDESS 152
            D+ S
Sbjct: 738 QDKES 742



 Score = 34.3 bits (77), Expect(2) = 4e-14
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -3

Query: 458 WRAKVLSQASRTTLVKTLS*AVPVYTISAFVLPAKVIN 345
           W+ + LS A R TL K +  ++PV+ +SA +LP   ++
Sbjct: 642 WKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLD 679


>ref|XP_003530391.1| PREDICTED: uncharacterized protein LOC100804594 [Glycine max]
          Length = 4413

 Score = 62.0 bits (149), Expect(2) = 7e-13
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
 Frame = -1

Query: 349  LIDRLDQLNRNFWWHGTMHSNSTHTMNWDKLCSPKDKGRLGFREAKGMNQALIAKLCWSL 170
            ++D+L  L RNF W G  H      + WD +C PK++G LG ++    N AL  +  W L
Sbjct: 2954 IVDKLVSLQRNFMWGGNQHHKRISWVKWDVICLPKNEGGLGIKDLAKFNAALRGRWIWDL 3013

Query: 169  TVDESSYGKD---SKRGIWLGMEDNANK-------RDKRVLFLRGVMELMEEVKDGSVWR 20
              + + +      SK G W  ++   +K       +D R L+ +    ++++     +W+
Sbjct: 3014 AANHNQFWARVLISKYGGWADLQSGRDKVWHSQWWKDLRRLYHQPDFNIIQQ---NMIWK 3070

Query: 19   VG 14
            VG
Sbjct: 3071 VG 3072



 Score = 36.2 bits (82), Expect(2) = 7e-13
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 458  WRAKVLSQASRTTLVKTLS*AVPVYTISAFVLPAKVIN 345
            W  K LS  ++ TL+K++  A+P+Y +S F +P ++++
Sbjct: 2919 WNQKNLSMGAKVTLIKSVLNALPIYLLSFFKIPQRIVD 2956



 Score = 53.9 bits (128), Expect(2) = 2e-10
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = -1

Query: 349  LIDRLDQLNRNFWWHGTMHSNSTHTMNWDKLCSPKDKGRLGFREAKGMNQALIAKLCWSL 170
            ++DRL  L RNF W G  H      + WD +C PK +  LG ++    N AL  K  W L
Sbjct: 1432 IVDRLVSLQRNFMWGGNQHQKRVSWVKWDVICLPKSERGLGIKDLAKFNAALRGKWIWDL 1491

Query: 169  TVD-----ESSYGKDSKR 131
                     S + KD +R
Sbjct: 1492 ATGRDKGWHSYWWKDLRR 1509



 Score = 36.2 bits (82), Expect(2) = 2e-10
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = -3

Query: 458  WRAKVLSQASRTTLVKTLS*AVPVYTISAFVLPAKVIN 345
            W  K LS  ++ TL+K++  A+P+Y +S F +P ++++
Sbjct: 1397 WNQKNLSMGAKVTLIKSVLNALPIYLLSFFKIPQRIVD 1434


>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
          Length = 1270

 Score = 65.9 bits (159), Expect(2) = 1e-12
 Identities = 26/58 (44%), Positives = 35/58 (60%)
 Frame = -1

Query: 343 DRLDQLNRNFWWHGTMHSNSTHTMNWDKLCSPKDKGRLGFREAKGMNQALIAKLCWSL 170
           + L+    +FWW    HS   H  +W++LC PKD G LGFR+ +  NQAL+AK  W L
Sbjct: 779 ENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRL 836



 Score = 32.0 bits (71), Expect(2) = 1e-12
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 458 WRAKVLSQASRTTLVKTLS*AVPVYTISAFVLP 360
           W  + LSQ  +  L+K+++ A+PV+ +S F LP
Sbjct: 742 WFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLP 774