BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027625
         (433 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   119   2e-25
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   119   3e-25
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   116   2e-24
gb|AAP53939.1| retrotransposon protein, putative, unclassified [...   100   9e-20
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    95   7e-18

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  119 bits (299), Expect = 2e-25
 Identities = 62/125 (49%), Positives = 86/125 (68%)
 Frame = +2

Query: 2   LIPKEKNAMQLNRYRPICLSNFAYKVITKILASRLSIITQRIISKQQYGFISGRNSHQAI 181
           LIPK +NA  ++++RPI ++NF +K+I+KILA RL+ I   I+S++Q GFI GRN    +
Sbjct: 179 LIPKTQNADSMDQFRPIAMANFKFKIISKILADRLAQIMPNIVSQEQRGFIQGRNIKDCV 238

Query: 182 GLASELVNDLKLKSNGGSLALKLDISQAFDTLDGDFLWAVLNHFLFSSIWMDWIKGALTN 361
            LASE +N L  KS GG+LA K+DIS+AFDTL+  FL  VL  F FS  + +WI   L +
Sbjct: 239 CLASEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQS 298

Query: 362 NNISI 376
             +SI
Sbjct: 299 AKLSI 303


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  119 bits (297), Expect = 3e-25
 Identities = 62/125 (49%), Positives = 85/125 (68%)
 Frame = +2

Query: 2   LIPKEKNAMQLNRYRPICLSNFAYKVITKILASRLSIITQRIISKQQYGFISGRNSHQAI 181
           LIPK  NA  +++YR I L NF +K+I K+LA RL+ I   IISK+Q GF+ GRN    I
Sbjct: 240 LIPKTPNADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCI 299

Query: 182 GLASELVNDLKLKSNGGSLALKLDISQAFDTLDGDFLWAVLNHFLFSSIWMDWIKGALTN 361
            L SE +N L  KS GG+LALK+D+++AFDTL+ DFL  VL  F F+ ++ +WIK  L +
Sbjct: 300 ALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHS 359

Query: 362 NNISI 376
           + + I
Sbjct: 360 SKMFI 364


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score =  116 bits (290), Expect = 2e-24
 Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 2/144 (1%)
 Frame = +2

Query: 2   LIPKEKNAMQLNRYRPICLSNFAYKVITKILASRLSIITQRIISKQQYGFISGRNSHQAI 181
           LIPK   A  +  YRPI L+NF +K+I+KILA RL+ IT RIIS +Q GFI  R+  + +
Sbjct: 505 LIPKVPGARVMGDYRPIALANFQFKIISKILADRLADITMRIISVEQRGFIRDRDISKCV 564

Query: 182 GLASELVNDLKLKSNGGSLALKLDISQAFDTLDGDFLWAVLNHFLFSSIWMDWIKGALTN 361
            LASE +N L+ +  GG++ALK+DI++AFDTLD +FL AVL  F F   ++ WI   L +
Sbjct: 565 ILASEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQS 624

Query: 362 NNISIL--WRPVGLFLS*EGA*AG 427
             +S+L   + VG F    G   G
Sbjct: 625 ARLSVLVNGKAVGFFTCSHGVRQG 648


>gb|AAP53939.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1652

 Score =  100 bits (250), Expect = 9e-20
 Identities = 46/125 (36%), Positives = 80/125 (64%)
 Frame = +2

Query: 2    LIPKEKNAMQLNRYRPICLSNFAYKVITKILASRLSIITQRIISKQQYGFISGRNSHQAI 181
            L+PK+K+A ++ +YRPICL N ++K+ TK++A+R++++ Q++I   Q  F+SGRN  + +
Sbjct: 1210 LLPKQKDASRIQQYRPICLLNVSFKIFTKVMANRIALVAQKVIKPSQTTFLSGRNIMEGV 1269

Query: 182  GLASELVNDLKLKSNGGSLALKLDISQAFDTLDGDFLWAVLNHFLFSSIWMDWIKGALTN 361
             +  E +++L  K   G + LKLD  +A+D +D  FL   L    FSS W DWI   +  
Sbjct: 1270 VILHETLHELHKKKKNG-VILKLDFEKAYDKVDWKFLQQSLRMKGFSSKWCDWIDSIVRG 1328

Query: 362  NNISI 376
             ++++
Sbjct: 1329 GSVAV 1333


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
 Frame = +2

Query: 2    LIPKEKNAMQLNRYRPICLSNFAYKVITKILASRLSIITQRIISKQQYGFISGRNSHQAI 181
            LIPK K     + YRPI L NF+YK++TKI+ASRL      +IS  Q  F+S R     +
Sbjct: 1100 LIPKVKAPTHPSHYRPIALCNFSYKILTKIIASRLQPFMSELISDNQSAFVSNRQIQDNV 1159

Query: 182  GLASELVNDLKL--KSNGGSLALKLDISQAFDTLDGDFLWAVLNHFLFSSIWMDWIKGAL 355
             +A E+ + LKL    N G+  LKLD+++A+D ++ +FL AVL    F   W+  +   +
Sbjct: 1160 IIAHEIYHHLKLTRSCNNGAFGLKLDMNKAYDRVEWNFLEAVLRKMGFVDSWIGLVMSCV 1219

Query: 356  TNNNISIL 379
            T +++S+L
Sbjct: 1220 TTSSLSVL 1227