BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027617
         (455 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [...   165   7e-60
ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative ...   164   6e-59
ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-l...   161   8e-59
ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago ...   161   2e-58
gb|AFK39498.1| unknown [Medicago truncatula]                          160   2e-58

>ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [Vitis vinifera]
           gi|147867252|emb|CAN81194.1| hypothetical protein
           VITISV_022853 [Vitis vinifera]
           gi|297745390|emb|CBI40470.3| unnamed protein product
           [Vitis vinifera]
          Length = 241

 Score =  165 bits (417), Expect(2) = 7e-60
 Identities = 81/87 (93%), Positives = 86/87 (98%)
 Frame = -3

Query: 261 HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDL 82
           HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAG+LNSTPLLDL
Sbjct: 110 HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDL 169

Query: 81  NYIEDSAGGPDVTVGMLSKLEKVTLLQ 1
           NY+EDSAGGPDVTVG+L KL+KVTLLQ
Sbjct: 170 NYVEDSAGGPDVTVGILPKLDKVTLLQ 196



 Score = 90.9 bits (224), Expect(2) = 7e-60
 Identities = 43/46 (93%), Positives = 45/46 (97%)
 Frame = -1

Query: 455 EYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 318
           EY+MANFSTGDRMRKPKGDRRS EISLVIRQTMEACI+THLMPRSQ
Sbjct: 71  EYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQ 116


>ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
           gi|223529966|gb|EEF31893.1| Exosome complex exonuclease
           RRP41, putative [Ricinus communis]
          Length = 241

 Score =  164 bits (414), Expect(2) = 6e-59
 Identities = 80/87 (91%), Positives = 86/87 (98%)
 Frame = -3

Query: 261 HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDL 82
           HLMPRSQIDI+VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAG+LNSTPLLDL
Sbjct: 110 HLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDL 169

Query: 81  NYIEDSAGGPDVTVGMLSKLEKVTLLQ 1
           NY+EDSAGGPDVTVG+L KL+KVTLLQ
Sbjct: 170 NYVEDSAGGPDVTVGILPKLDKVTLLQ 196



 Score = 89.0 bits (219), Expect(2) = 6e-59
 Identities = 42/46 (91%), Positives = 44/46 (95%)
 Frame = -1

Query: 455 EYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 318
           EY+MANFSTGDRMRKPKGDRRS EISLVIRQTME CI+THLMPRSQ
Sbjct: 71  EYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ 116


>ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
          Length = 241

 Score =  161 bits (408), Expect(2) = 8e-59
 Identities = 78/87 (89%), Positives = 86/87 (98%)
 Frame = -3

Query: 261 HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDL 82
           HL+PRSQIDI+VQVLQADGGTRSACINAATLALADAGIPMRD+VTSCSAG+LNSTPLLDL
Sbjct: 110 HLLPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMRDLVTSCSAGYLNSTPLLDL 169

Query: 81  NYIEDSAGGPDVTVGMLSKLEKVTLLQ 1
           NY+EDSAGGPDVT+G+L KL+KVTLLQ
Sbjct: 170 NYVEDSAGGPDVTLGILPKLDKVTLLQ 196



 Score = 90.9 bits (224), Expect(2) = 8e-59
 Identities = 43/46 (93%), Positives = 45/46 (97%)
 Frame = -1

Query: 455 EYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 318
           EYSMANFSTGDRMRKPKGDRRS EISLVIRQTMEACI+THL+PRSQ
Sbjct: 71  EYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLLPRSQ 116


>ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
           gi|355501548|gb|AES82751.1| Exosome complex exonuclease
           RRP41 [Medicago truncatula]
          Length = 241

 Score =  161 bits (407), Expect(2) = 2e-58
 Identities = 79/87 (90%), Positives = 85/87 (97%)
 Frame = -3

Query: 261 HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDL 82
           HLMPRSQIDI+VQVLQADGGTRSACINAATLALADAGIPM D+VTSCSAG+LNSTPLLDL
Sbjct: 110 HLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLDL 169

Query: 81  NYIEDSAGGPDVTVGMLSKLEKVTLLQ 1
           NY+EDSAGGPDVTVG+L KL+KVTLLQ
Sbjct: 170 NYVEDSAGGPDVTVGILPKLDKVTLLQ 196



 Score = 90.1 bits (222), Expect(2) = 2e-58
 Identities = 43/46 (93%), Positives = 44/46 (95%)
 Frame = -1

Query: 455 EYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 318
           EYSMANFSTGDRMRKPKGDRRS EISLVIRQTME CI+THLMPRSQ
Sbjct: 71  EYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ 116


>gb|AFK39498.1| unknown [Medicago truncatula]
          Length = 180

 Score =  160 bits (406), Expect(2) = 2e-58
 Identities = 79/87 (90%), Positives = 85/87 (97%)
 Frame = -3

Query: 261 HLMPRSQIDIFVQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGFLNSTPLLDL 82
           HLMPRSQIDI+VQVLQADGGTRSACINAATLALADAGIPM D+VTSCSAG+LNSTPLLDL
Sbjct: 49  HLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLDL 108

Query: 81  NYIEDSAGGPDVTVGMLSKLEKVTLLQ 1
           NY+EDSAGGPDVTVG+L KL+KVTLLQ
Sbjct: 109 NYVEDSAGGPDVTVGILLKLDKVTLLQ 135



 Score = 90.1 bits (222), Expect(2) = 2e-58
 Identities = 43/46 (93%), Positives = 44/46 (95%)
 Frame = -1

Query: 455 EYSMANFSTGDRMRKPKGDRRSIEISLVIRQTMEACIMTHLMPRSQ 318
           EYSMANFSTGDRMRKPKGDRRS EISLVIRQTME CI+THLMPRSQ
Sbjct: 10  EYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQ 55