BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027604
         (482 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat...   238   4e-61
ref|XP_002521068.1| pentatricopeptide repeat-containing protein,...   229   2e-58
ref|XP_002301797.1| predicted protein [Populus trichocarpa] gi|2...   212   3e-53
tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea m...   211   5e-53
ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [S...   202   3e-50

>ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  238 bits (607), Expect = 4e-61
 Identities = 111/160 (69%), Positives = 136/160 (85%)
 Frame = +2

Query: 2   FDQIKLRDLISWNAIIAIYGVHGYGKEALLLFLEMKETGIKPDHATFASLLSACSHSGLV 181
           FDQI  RD ISWNAIIA YG+HG G+EAL LFL+M+ET +KPDHATFASLLSA SHSGLV
Sbjct: 364 FDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLV 423

Query: 182 EEGLYWFNLMSKEFNIHPSEKHYACLVDLLARAGQVEEAYKMIESMVIEPGVTVWVALLA 361
           E+G YWF++M  E+ I PSEKHYAC+VDLL+RAG+VEEA ++IESM+ EPG+ +WVALL+
Sbjct: 424 EKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLS 483

Query: 362 GCGNHRKLDLGQLVAQKVLELRSDDPGIYTLVSNVFASAK 481
           GC NH K  +G++ A+KVLEL  DDPGIY+LVSN FA+A+
Sbjct: 484 GCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATAR 523



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 31/125 (24%), Positives = 65/125 (52%)
 Frame = +2

Query: 2   FDQIKLRDLISWNAIIAIYGVHGYGKEALLLFLEMKETGIKPDHATFASLLSACSHSGLV 181
           F ++  +++ISW+A+I+ +  +G+   AL L ++M+  G KPD  +  S+L ACS  G +
Sbjct: 264 FRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFL 323

Query: 182 EEGLYWFNLMSKEFNIHPSEKHYACLVDLLARAGQVEEAYKMIESMVIEPGVTVWVALLA 361
           + G      + +   +H        ++D+ ++ G +  A  + + +     ++ W A++A
Sbjct: 324 KLGKSVHGYIVR--RLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSIS-WNAIIA 380

Query: 362 GCGNH 376
             G H
Sbjct: 381 SYGIH 385


>ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539637|gb|EEF41219.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 579

 Score =  229 bits (584), Expect = 2e-58
 Identities = 110/160 (68%), Positives = 134/160 (83%)
 Frame = +2

Query: 2   FDQIKLRDLISWNAIIAIYGVHGYGKEALLLFLEMKETGIKPDHATFASLLSACSHSGLV 181
           FDQI+ RDLI WNA+I+ YG+HG G EAL LFL+MKET I PDHATFASLLSACSHSGLV
Sbjct: 343 FDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLV 402

Query: 182 EEGLYWFNLMSKEFNIHPSEKHYACLVDLLARAGQVEEAYKMIESMVIEPGVTVWVALLA 361
           EEG YWF+++  +  I PSEKHYAC+VDLL+RAGQVEEAY++IESM I+PG+ +WVALL+
Sbjct: 403 EEGQYWFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLS 462

Query: 362 GCGNHRKLDLGQLVAQKVLELRSDDPGIYTLVSNVFASAK 481
           GC NH+ L +G++VA+K+LE   DD GIY LVSN F+ AK
Sbjct: 463 GCLNHKNLLIGEMVAKKILESNPDDLGIYVLVSNFFSMAK 502



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
 Frame = +2

Query: 2   FDQIKLRDLISWNAIIAIYGVHGYGKEALLLFLEMKETGIKPDHATFASLLSACSHSGLV 181
           F+ I  + +ISW A+I+ +  +G+  + L   +EM+ +G KPD  +  S LSAC+  G +
Sbjct: 243 FEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNL 302

Query: 182 EEGLYWFNLMSKEFNIHPSEKHYACLVDLLARAGQVEEAYKMIESMVIEP-GVTVWVALL 358
           + G      + K   ++  +     L+D+ A+ G +  A  + +   IEP  + +W A++
Sbjct: 303 KVGKSLHGHIVK--RLYLDKVSGTALIDMYAKCGALTFARALFDQ--IEPRDLILWNAMI 358

Query: 359 AGCGNH 376
           +  G H
Sbjct: 359 SSYGIH 364



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 33/121 (27%), Positives = 64/121 (52%)
 Frame = +2

Query: 2   FDQIKLRDLISWNAIIAIYGVHGYGKEALLLFLEMKETGIKPDHATFASLLSACSHSGLV 181
           F+++  R + +WN++I  Y    Y  E L L+  M   GIKPD +TF   L ACS    +
Sbjct: 41  FEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDL 100

Query: 182 EEGLYWFNLMSKEFNIHPSEKHYACLVDLLARAGQVEEAYKMIESMVIEPGVTVWVALLA 361
           + G   +N  + +F         + +++L A++G++++A K++   +++  V  W  ++ 
Sbjct: 101 DMGEIIWN-QAVDFGYGFDVFVVSSVLNLYAKSGKMDKA-KIVFDKMVKRDVVSWTTMIT 158

Query: 362 G 364
           G
Sbjct: 159 G 159


>ref|XP_002301797.1| predicted protein [Populus trichocarpa] gi|222843523|gb|EEE81070.1|
           predicted protein [Populus trichocarpa]
          Length = 602

 Score =  212 bits (539), Expect = 3e-53
 Identities = 101/160 (63%), Positives = 124/160 (77%)
 Frame = +2

Query: 2   FDQIKLRDLISWNAIIAIYGVHGYGKEALLLFLEMKETGIKPDHATFASLLSACSHSGLV 181
           FD++  RD+I WN +IA YG+HG GKE L LFL+MKE  I PDHATFASLLSA SHSG V
Sbjct: 366 FDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQV 425

Query: 182 EEGLYWFNLMSKEFNIHPSEKHYACLVDLLARAGQVEEAYKMIESMVIEPGVTVWVALLA 361
           + G YWFN M  E  I PSEKHYAC+VDL +RAG+VEEAY++IESM  EPG+ +WVALL+
Sbjct: 426 DVGQYWFNAMVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLS 485

Query: 362 GCGNHRKLDLGQLVAQKVLELRSDDPGIYTLVSNVFASAK 481
           GC N+R L  G++ A+K+L+L  DD GIY LVSN F+ A+
Sbjct: 486 GCHNYRNLLFGEVAAKKILDLNPDDLGIYALVSNFFSLAR 525



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 2/127 (1%)
 Frame = +2

Query: 2   FDQIKLRDLISWNAIIAIYGVHGYGKEALLLFLEMKETGIKPDHATFASLLSACSHSGLV 181
           F+Q+  ++ +SW A+I+ +  +G+ + AL L +EM+    KPD A   S L ACS  G +
Sbjct: 266 FEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHL 325

Query: 182 EEG--LYWFNLMSKEFNIHPSEKHYACLVDLLARAGQVEEAYKMIESMVIEPGVTVWVAL 355
           + G  ++ + +    F +         L+D+ A+ G +  A+ + +  V    V +W  +
Sbjct: 326 KLGKSIHGYIVRRLGFELVLG----TALIDMYAKCGSLSCAHAIFD-RVDSRDVILWNTM 380

Query: 356 LAGCGNH 376
           +A  G H
Sbjct: 381 IASYGIH 387


>tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  211 bits (537), Expect = 5e-53
 Identities = 100/160 (62%), Positives = 127/160 (79%)
 Frame = +2

Query: 2   FDQIKLRDLISWNAIIAIYGVHGYGKEALLLFLEMKETGIKPDHATFASLLSACSHSGLV 181
           F+++  RDL+ WNAIIA  G HG G +AL LF E+ ETGIKPDHATFASLLSA SHSGLV
Sbjct: 366 FNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLV 425

Query: 182 EEGLYWFNLMSKEFNIHPSEKHYACLVDLLARAGQVEEAYKMIESMVIEPGVTVWVALLA 361
           EEG +WF+ M KEF I P+EKHY C+VDLLAR+G VEEA  M+ SM  EP + +WV LL+
Sbjct: 426 EEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLS 485

Query: 362 GCGNHRKLDLGQLVAQKVLELRSDDPGIYTLVSNVFASAK 481
           GC N++KL+LG+ +A+K+LELR +D G+  LVSN++A+AK
Sbjct: 486 GCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAK 525


>ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
           gi|241918863|gb|EER92007.1| hypothetical protein
           SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  202 bits (513), Expect = 3e-50
 Identities = 96/160 (60%), Positives = 126/160 (78%)
 Frame = +2

Query: 2   FDQIKLRDLISWNAIIAIYGVHGYGKEALLLFLEMKETGIKPDHATFASLLSACSHSGLV 181
           F+++  RDL+ WNA+IA  G HG G +AL LF E+ ETGIKPDHATFASLLSA SHSGLV
Sbjct: 370 FNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLV 429

Query: 182 EEGLYWFNLMSKEFNIHPSEKHYACLVDLLARAGQVEEAYKMIESMVIEPGVTVWVALLA 361
           EEG +WF+ M  EF I P+EKH  C+VDLLAR+G VEEA +M+ SM  EP + +WVALL+
Sbjct: 430 EEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLS 489

Query: 362 GCGNHRKLDLGQLVAQKVLELRSDDPGIYTLVSNVFASAK 481
           GC N++KL+LG+ +A+K+LE + +D G+  LVSN++A+AK
Sbjct: 490 GCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAK 529



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
 Frame = +2

Query: 2   FDQIKLRDLISWNAIIAIYGVHGYGKEALLLFLEMKETGIKPDHATFASLLSACSHSGLV 181
           F  +  R+ +SWNA+I+ +  +G+  EAL LF EM  +G++PD     S L AC+  G +
Sbjct: 270 FRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFL 329

Query: 182 EEG--LYWFNLMSKEFNIHPSEKHYACLVDLLARAGQVEEAYKMIESMVIEPGVTVWVAL 355
           + G  ++ F L   EF           ++D+ ++ G +E A K+   +     + +W A+
Sbjct: 330 KLGKSIHGFILRRLEFQCILG----TAVLDMYSKCGSLESARKLFNKL-SSRDLVLWNAM 384

Query: 356 LAGCGNH 376
           +A CG H
Sbjct: 385 IACCGTH 391