BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027533
         (545 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24452.3| unnamed protein product [Vitis vinifera]              221   6e-56
ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containi...   197   7e-49
ref|XP_003629226.1| Pentatricopeptide repeat-containing protein ...   193   1e-47
ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containi...   182   3e-44
gb|ACU21153.1| unknown [Glycine max]                                  182   3e-44

>emb|CBI24452.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  221 bits (563), Expect = 6e-56
 Identities = 103/141 (73%), Positives = 124/141 (87%)
 Frame = +2

Query: 8   MRDYGVDRWEEHYACMVDLLGRAGQLNEALKLIESMPVKGGKDVYGALLGACRIHNNIEL 187
           M DYGV++  EHYA +VD+LGRAG L+EA++ +++MPV+ GKDVYGALLGACRIHNNIEL
Sbjct: 339 MGDYGVEKSSEHYASVVDILGRAGFLHEAVEFVKNMPVQPGKDVYGALLGACRIHNNIEL 398

Query: 188 AEEAAERLFVLDPQNAGRYIILAKMYEDAGRWTDAARVRKALREKQIKKQPGCSAVEVNC 367
           AEE AE+LFVLDP NAGRYIIL KMYEDAG+W +AAR+RKAL+EK I+K  GCSA+E+ C
Sbjct: 399 AEEIAEKLFVLDPDNAGRYIILVKMYEDAGKWENAARLRKALKEKNIRKPLGCSAIELGC 458

Query: 368 ILHTFGVEDESHPLKGQIFDT 430
           +LHTFGVED+SHP K QIFDT
Sbjct: 459 VLHTFGVEDKSHPFKDQIFDT 479


>ref|XP_004146207.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 480

 Score =  197 bits (502), Expect = 7e-49
 Identities = 90/141 (63%), Positives = 115/141 (81%)
 Frame = +2

Query: 8   MRDYGVDRWEEHYACMVDLLGRAGQLNEALKLIESMPVKGGKDVYGALLGACRIHNNIEL 187
           M  YG++R + HYACMVDLLGRAG L +A++ IE MPV+ GKDVYGALLGACRIHNN+EL
Sbjct: 325 MEAYGLERKDNHYACMVDLLGRAGFLEQAVEFIEGMPVQAGKDVYGALLGACRIHNNLEL 384

Query: 188 AEEAAERLFVLDPQNAGRYIILAKMYEDAGRWTDAARVRKALREKQIKKQPGCSAVEVNC 367
           A+E  E+LF+LDP+ A RY+ LA MYEDAG+W DAA++RK LR++ I+K  GCS++EV+ 
Sbjct: 385 AKEVGEKLFILDPEKASRYVTLATMYEDAGQWEDAAKLRKLLRDRNIRKPAGCSSIEVDR 444

Query: 368 ILHTFGVEDESHPLKGQIFDT 430
           I H FG +DE+HPL  +IFDT
Sbjct: 445 IHHVFGKKDETHPLTEEIFDT 465


>ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355523248|gb|AET03702.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 510

 Score =  193 bits (491), Expect = 1e-47
 Identities = 95/143 (66%), Positives = 116/143 (81%)
 Frame = +2

Query: 2   RSMRDYGVDRWEEHYACMVDLLGRAGQLNEALKLIESMPVKGGKDVYGALLGACRIHNNI 181
           ++M  YGV + E HYACMVDLLGRAG L +A++LI+SMP++ GK+VYGALLGA RIH NI
Sbjct: 348 QTMETYGVVKGEAHYACMVDLLGRAGNLEKAMELIQSMPIQPGKNVYGALLGASRIHKNI 407

Query: 182 ELAEEAAERLFVLDPQNAGRYIILAKMYEDAGRWTDAARVRKALREKQIKKQPGCSAVEV 361
           ELAE AAE+LFVLDP NAGRY+ILA+MYED GRW DAAR+RK +REK+IKK  G S+VE+
Sbjct: 408 ELAELAAEKLFVLDPNNAGRYVILAQMYEDEGRWKDAARLRKIIREKEIKKPIGYSSVEL 467

Query: 362 NCILHTFGVEDESHPLKGQIFDT 430
                 FGV DE+HPL  +IF+T
Sbjct: 468 ESGHKKFGVNDETHPLTTEIFET 490


>ref|XP_003520093.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 503

 Score =  182 bits (462), Expect = 3e-44
 Identities = 89/140 (63%), Positives = 111/140 (79%)
 Frame = +2

Query: 5   SMRDYGVDRWEEHYACMVDLLGRAGQLNEALKLIESMPVKGGKDVYGALLGACRIHNNIE 184
           +M  YGV + E HYAC+VDLLGRAG L +A++ I+SMP++ GK++YGALLGACRIH N+E
Sbjct: 347 AMETYGVAKSEAHYACIVDLLGRAGDLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNME 406

Query: 185 LAEEAAERLFVLDPQNAGRYIILAKMYEDAGRWTDAARVRKALREKQIKKQPGCSAVEVN 364
           LAE AAE+LFVLDP NAGRY+ILA+MYEDA RW DAARVRK +++K+IKK  G S+VE+ 
Sbjct: 407 LAELAAEKLFVLDPDNAGRYVILAQMYEDAERWQDAARVRKVVKDKEIKKPIGYSSVELE 466

Query: 365 CILHTFGVEDESHPLKGQIF 424
                FGV DE+H    QIF
Sbjct: 467 SGHQKFGVNDETHVHTTQIF 486


>gb|ACU21153.1| unknown [Glycine max]
          Length = 529

 Score =  182 bits (462), Expect = 3e-44
 Identities = 89/140 (63%), Positives = 111/140 (79%)
 Frame = +2

Query: 5   SMRDYGVDRWEEHYACMVDLLGRAGQLNEALKLIESMPVKGGKDVYGALLGACRIHNNIE 184
           +M  YGV + E HYAC+VDLLGRAG L +A++ I+SMP++ GK++YGALLGACRIH N+E
Sbjct: 347 AMETYGVAKSEAHYACIVDLLGRAGDLEKAVEFIQSMPIQPGKNIYGALLGACRIHKNME 406

Query: 185 LAEEAAERLFVLDPQNAGRYIILAKMYEDAGRWTDAARVRKALREKQIKKQPGCSAVEVN 364
           LAE AAE+LFVLDP NAGRY+ILA+MYEDA RW DAARVRK +++K+IKK  G S+VE+ 
Sbjct: 407 LAELAAEKLFVLDPDNAGRYVILAQMYEDAERWLDAARVRKVVKDKEIKKPIGYSSVELE 466

Query: 365 CILHTFGVEDESHPLKGQIF 424
                FGV DE+H    QIF
Sbjct: 467 SGHQKFGVNDETHVHTTQIF 486