BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027510
         (295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...    68   5e-12
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...    73   6e-12
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...    59   2e-10
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    55   9e-10
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    57   9e-10

>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score = 67.8 bits (164), Expect(2) = 5e-12
 Identities = 29/62 (46%), Positives = 48/62 (77%)
 Frame = +2

Query: 110 IYKCVSKVLTNKMKHCIHAMISSSQSAFVPGRFI*DNLLLAHELLRGHTRKKGQKRCAIK 289
           IYK +SK+LT++M+  +++++S +QSAFV GR I DN++L+HEL++ ++RK    RC +K
Sbjct: 206 IYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVK 265

Query: 290 FD 295
            D
Sbjct: 266 ID 267



 Score = 27.7 bits (60), Expect(2) = 5e-12
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 25  MP*GINSTLLSLIPKSCASVSVDAFRPI 108
           MP  IN T ++L+PK     SV  FRPI
Sbjct: 173 MPKIINCTYMTLLPKEVNVTSVKNFRPI 200


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score = 72.8 bits (177), Expect(2) = 6e-12
 Identities = 34/62 (54%), Positives = 46/62 (74%)
 Frame = +2

Query: 110 IYKCVSKVLTNKMKHCIHAMISSSQSAFVPGRFI*DNLLLAHELLRGHTRKKGQKRCAIK 289
           IYK +SK+LTN+MK  I  +++ +QS F+PGR I DN+LLA EL+RG+TRK    RC +K
Sbjct: 523 IYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMK 582

Query: 290 FD 295
            D
Sbjct: 583 VD 584



 Score = 22.3 bits (46), Expect(2) = 6e-12
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 37  INSTLLSLIPKSCASVSVDAFRPI 108
           IN  +++L+PK   +  V  FRPI
Sbjct: 494 INCIVVTLLPKVQHATRVKEFRPI 517


>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score = 59.3 bits (142), Expect(2) = 2e-10
 Identities = 28/62 (45%), Positives = 42/62 (67%)
 Frame = +2

Query: 110  IYKCVSKVLTNKMKHCIHAMISSSQSAFVPGRFI*DNLLLAHELLRGHTRKKGQKRCAIK 289
            IYK +SK++ N++KH +   I+ +QSAFV  R + +NLLLA EL++ + +     RCAIK
Sbjct: 953  IYKVISKIIANRLKHVLPNFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISGRCAIK 1012

Query: 290  FD 295
             D
Sbjct: 1013 ID 1014



 Score = 30.4 bits (67), Expect(2) = 2e-10
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 25   MP*GINSTLLSLIPKSCASVSVDAFRPI 108
            +P G+N+T+L+LIPK   +  +  +RPI
Sbjct: 920  LPKGVNTTILALIPKKLEAKEMKDYRPI 947


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 55.1 bits (131), Expect(2) = 9e-10
 Identities = 26/62 (41%), Positives = 41/62 (66%)
 Frame = +2

Query: 110 IYKCVSKVLTNKMKHCIHAMISSSQSAFVPGRFI*DNLLLAHELLRGHTRKKGQKRCAIK 289
           +YK +SK++ N++K  +   I+ +QSAFV  R + +NLLLA EL++ + +     RCAIK
Sbjct: 538 LYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIK 597

Query: 290 FD 295
            D
Sbjct: 598 ID 599



 Score = 32.7 bits (73), Expect(2) = 9e-10
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +1

Query: 10  FTLK*MP*GINSTLLSLIPKSCASVSVDAFRPI 108
           FT   +P GINST+L+LIPK   +  +  +RPI
Sbjct: 500 FTKGFLPKGINSTILALIPKKTEAREMKDYRPI 532


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 57.4 bits (137), Expect(2) = 9e-10
 Identities = 25/62 (40%), Positives = 42/62 (67%)
 Frame = +2

Query: 110 IYKCVSKVLTNKMKHCIHAMISSSQSAFVPGRFI*DNLLLAHELLRGHTRKKGQKRCAIK 289
           +YK +SK++ N++K  +   I+ +QSAF+  R + +NLLLA EL++ + +    +RCAIK
Sbjct: 56  LYKVISKIIANRLKRVLPQFIAGNQSAFIKDRLLIENLLLATELVKDYHKDSVSERCAIK 115

Query: 290 FD 295
            D
Sbjct: 116 ID 117



 Score = 30.4 bits (67), Expect(2) = 9e-10
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 34  GINSTLLSLIPKSCASVSVDAFRPI 108
           G+NST+L+LIPK   +  +  +RPI
Sbjct: 26  GVNSTILALIPKKMEAKEIKDYRPI 50