BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027477
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containi...   188   5e-46
ref|XP_002530223.1| pentatricopeptide repeat-containing protein,...   188   5e-46
emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]   188   5e-46
ref|XP_002320514.1| predicted protein [Populus trichocarpa] gi|2...   185   3e-45
ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containi...   173   1e-41

>ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score =  188 bits (477), Expect = 5e-46
 Identities = 89/115 (77%), Positives = 106/115 (92%)
 Frame = +2

Query: 2   NDASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNAL 181
           ++A++IF+EMK  DV PNT+TYNTLINGYSQVGN+EM GRL++EML +G+KADI+TYNAL
Sbjct: 401 HEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNAL 460

Query: 182 ILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSM 346
           ILGLC EG+TK AAYLVKELD+ENLVPN+STFS LI GQCVR+NSERAFQ+YKSM
Sbjct: 461 ILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSM 515



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 40/113 (35%), Positives = 59/113 (52%)
 Frame = +2

Query: 8   ASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNALIL 187
           A  +F  M+T+  +P   +YNTLI GY   G      +L   M  +GV+ D VT+N LI 
Sbjct: 333 AIEVFKRMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLIN 392

Query: 188 GLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSM 346
           G C+ GK   A  +  E+   ++VPN  T++ LI G     NSE   +++  M
Sbjct: 393 GFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEM 445



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/114 (27%), Positives = 58/114 (50%)
 Frame = +2

Query: 8   ASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNALIL 187
           A+ +  E+   ++ PN+ T++ LI G     N+E + +LY+ M+  G   +  T+  LI 
Sbjct: 473 AAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLIS 532

Query: 188 GLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSMK 349
             CK      A  +V+E+ + ++ P++ T S L  G  +    E A ++ K M+
Sbjct: 533 TFCKNEDFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGKEELALKLCKEME 586



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/114 (28%), Positives = 54/114 (47%)
 Frame = +2

Query: 8   ASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNALIL 187
           A   + EM+   ++PN  T N ++  + + G  E +  +++ M   G    I +YN LI 
Sbjct: 298 ALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKRMETMGFSPTITSYNTLIA 357

Query: 188 GLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSMK 349
           G C +G   +   L   ++K  + P+  TF+ LI G C       A +I+  MK
Sbjct: 358 GYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMK 411


>ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530270|gb|EEF32170.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 517

 Score =  188 bits (477), Expect = 5e-46
 Identities = 89/115 (77%), Positives = 106/115 (92%)
 Frame = +2

Query: 2   NDASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNAL 181
           ++AS++F+EMK ++VAPNT+TYNTLING+SQ+GN+EM  RLYEEM  +GVKADI+TYNAL
Sbjct: 303 HEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKADILTYNAL 362

Query: 182 ILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSM 346
           ILGLCKEGKTK AAY+VKELDKENLVPNASTFS LI GQC+R NS+RAFQ+YKSM
Sbjct: 363 ILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIRNNSDRAFQLYKSM 417



 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 46/115 (40%), Positives = 71/115 (61%)
 Frame = +2

Query: 8   ASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNALIL 187
           A ++F EM++V ++PN  +YNTLI GY + G    + +L   M A GV+A++VT+N+LI 
Sbjct: 235 AVQVFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLID 294

Query: 188 GLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSMKK 352
           G CKEGK   A+ +  E+   N+ PN  T++ LI G     NSE   ++Y+ M +
Sbjct: 295 GFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSR 349



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/114 (28%), Positives = 60/114 (52%)
 Frame = +2

Query: 8   ASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNALIL 187
           A   + EM+   ++PN  T N ++  + + G  E + +++EEM + G+  +  +YN LI+
Sbjct: 200 ALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIM 259

Query: 188 GLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSMK 349
           G C++G   +A  L   +  + +  N  TF++LI G C       A +++  MK
Sbjct: 260 GYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMK 313


>emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
          Length = 483

 Score =  188 bits (477), Expect = 5e-46
 Identities = 89/115 (77%), Positives = 106/115 (92%)
 Frame = +2

Query: 2   NDASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNAL 181
           ++A++IF+EMK  DV PNT+TYNTLINGYSQVGN+EM GRL++EML +G+KADI+TYNAL
Sbjct: 268 HEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIKADILTYNAL 327

Query: 182 ILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSM 346
           ILGLC EG+TK AAYLVKELD+ENLVPN+STFS LI GQCVR+NSERAFQ+YKSM
Sbjct: 328 ILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSM 382



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 40/113 (35%), Positives = 60/113 (53%)
 Frame = +2

Query: 8   ASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNALIL 187
           A  +F +M+T+  +P   +YNTLI GY   G      +L   M  +GV+ D VT+N LI 
Sbjct: 200 AIEVFKKMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLIN 259

Query: 188 GLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSM 346
           G C+ GK   A  +  E+   ++VPN  T++ LI G     NSE   +++  M
Sbjct: 260 GFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEM 312



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/114 (27%), Positives = 58/114 (50%)
 Frame = +2

Query: 8   ASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNALIL 187
           A+ +  E+   ++ PN+ T++ LI G     N+E + +LY+ M+  G   +  T+  LI 
Sbjct: 340 AAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQLYKSMIRSGCHPNYHTFKMLIS 399

Query: 188 GLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSMK 349
             CK      A  +V+E+ + ++ P++ T S L  G  +    E A ++ K M+
Sbjct: 400 TFCKNEDFDGAVEVVREMSERSIAPDSDTLSELCRGLWLSGKEELALKLCKEME 453



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 32/114 (28%), Positives = 55/114 (48%)
 Frame = +2

Query: 8   ASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNALIL 187
           A   + EM+   ++PN  T N ++  + + G  E +  ++++M   G    I +YN LI 
Sbjct: 165 ALTFYREMQRYRISPNVYTLNMVMCAFCKWGKLEKAIEVFKKMETMGFSPTITSYNTLIA 224

Query: 188 GLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSMK 349
           G C +G   +   L   ++K  + P+  TF+ LI G C       A +I+  MK
Sbjct: 225 GYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMK 278


>ref|XP_002320514.1| predicted protein [Populus trichocarpa] gi|222861287|gb|EEE98829.1|
           predicted protein [Populus trichocarpa]
          Length = 478

 Score =  185 bits (470), Expect = 3e-45
 Identities = 87/115 (75%), Positives = 105/115 (91%)
 Frame = +2

Query: 2   NDASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNAL 181
           ++A+R F+EMK ++V PNTVTYNTLINGY QVGN+ M+G++YEEM+ +GVKADI+TYNAL
Sbjct: 286 HEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNAL 345

Query: 182 ILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSM 346
           ILGLCKEGKTK AA+LVKELDKENLVPNAST+S LI GQC R+NS+RAFQ+YKSM
Sbjct: 346 ILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSM 400



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 42/115 (36%), Positives = 66/115 (57%)
 Frame = +2

Query: 8   ASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNALIL 187
           A  +  EM++V + PN V+YNTLI G+   G   ++ +L   M  +G++ ++VT+N+LI 
Sbjct: 218 AVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIH 277

Query: 188 GLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSMKK 352
           G CKEGK   A     E+   N+ PN  T++ LI G     NS  A ++Y+ M +
Sbjct: 278 GFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMR 332



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 35/114 (30%), Positives = 58/114 (50%)
 Frame = +2

Query: 8   ASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNALIL 187
           A   + EM+   ++PN+ T+N +++   + G  E +  +  EM + G+  ++V+YN LI 
Sbjct: 183 ALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIA 242

Query: 188 GLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSMK 349
           G C +G    A  L   + K  L PN  TF++LI G C       A + +  MK
Sbjct: 243 GHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMK 296


>ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
           gi|356526065|ref|XP_003531640.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score =  173 bits (438), Expect = 1e-41
 Identities = 83/115 (72%), Positives = 100/115 (86%)
 Frame = +2

Query: 2   NDASRIFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNAL 181
           ++A+R+FNEMK  +V P+ VTYNTL+NGY QVG++EM  R+YEEM+ +G+KADI+TYNAL
Sbjct: 312 HEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADILTYNAL 371

Query: 182 ILGLCKEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSM 346
           ILGLCK+GKTK AA  V+ELDKENLVPNASTFS LI GQCVR NSERAF IY+SM
Sbjct: 372 ILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQCVRNNSERAFLIYRSM 426



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 35/112 (31%), Positives = 65/112 (58%)
 Frame = +2

Query: 17  IFNEMKTVDVAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNALILGLC 196
           +  +M  + ++PN V++NTLI+GY   G   ++ ++   M+ +GV+ ++VT+N LI G C
Sbjct: 247 MLEKMMDMGLSPNVVSFNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLINGFC 306

Query: 197 KEGKTKNAAYLVKELDKENLVPNASTFSNLIMGQCVRQNSERAFQIYKSMKK 352
           KE K   A  +  E+   N+ P+  T++ L+ G     +SE   ++Y+ M +
Sbjct: 307 KERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMR 358



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
 Frame = +2

Query: 44  VAPNTVTYNTLINGYSQVGNNEMSGRLYEEMLAHGVKADIVTYNALILGLCKEGKTKNAA 223
           V+PN  T N +I  Y  +G  +    + E+M+  G+  ++V++N LI G C +G     A
Sbjct: 221 VSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLISGYCNKG-LFGLA 279

Query: 224 YLVKELDKENLV-PNASTFSNLIMGQCVRQNSERAFQIYKSMK 349
             VK L  EN V PN  TF+ LI G C  +    A +++  MK
Sbjct: 280 LKVKSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMK 322