BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027386
         (296 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    79   5e-13
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    77   1e-12
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    75   7e-12
ref|XP_003544295.1| PREDICTED: zinc finger CCCH domain-containin...    74   9e-12
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                74   1e-11

>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
 Frame = -2

Query: 295  SFLWAGPDMTPKMHHASHTLTRMDKEQGGLGIVDPSMWNKAAYCGLVFKIASYEDSLWVK 116
            +FLW+GPD+  K    + +     KE+GGLG+      N+ +   L+++I S  DSLWVK
Sbjct: 992  AFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVK 1051

Query: 115  WTIEHHVRKQHFWTM-EIPADCSWVWRNVLKLRKAAQKF 2
            W  +H +RK+ FW++ E     SW+WR +LK R  A+ F
Sbjct: 1052 WVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLF 1090


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 36/99 (36%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
 Frame = -2

Query: 295 SFLWAGPDMTPKMHHASHTLTRMDKEQGGLGIVDPSMWNKAAYCGLVFKIASYEDSLWVK 116
           + LW+GP++ PK    S       K++GGLG+      NK +   L++++ S +DSLWVK
Sbjct: 566 ALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVK 625

Query: 115 WTIEHHVRKQHFWTMEIPADC-SWVWRNVLKLRKAAQKF 2
           WT  + ++K+ FW++   +   SW+WR +LK R+ A+ F
Sbjct: 626 WTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSF 664


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
 Frame = -2

Query: 295 SFLWAGPDMTPKMHHASHTLTRMDKEQGGLGIVDPSMWNKAAYCGLVFKIASYED-SLWV 119
           SFLW+G DM       +     + K++GGLGI     WNK A    ++ + +  D S+W 
Sbjct: 132 SFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWS 191

Query: 118 KWTIEHHVRKQHFWTMEIPADCSWVWRNVLKLRKAA 11
            W   + +R ++FWT++ P +CSW W  +LKLR  A
Sbjct: 192 TWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLA 227


>ref|XP_003544295.1| PREDICTED: zinc finger CCCH domain-containing protein 66-like
           [Glycine max]
          Length = 1089

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 33/97 (34%), Positives = 50/97 (51%)
 Frame = -2

Query: 295 SFLWAGPDMTPKMHHASHTLTRMDKEQGGLGIVDPSMWNKAAYCGLVFKIASYEDSLWVK 116
           SFLW G     K    +       K QGGL +++   WNKA    L++ +   EDSLW++
Sbjct: 124 SFLWTGKSCVTKKSPVAWNKVCAPKNQGGLNVINFQSWNKACLIKLLWNLYKKEDSLWIQ 183

Query: 115 WTIEHHVRKQHFWTMEIPADCSWVWRNVLKLRKAAQK 5
           W   ++ R +   T+ I A CSW+ + +LK R   Q+
Sbjct: 184 WVHTYYTRGEDIMTVPIKASCSWIMKGILKQRVKVQE 220


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
 Frame = -2

Query: 295 SFLWAGPDMTPKMHHASHTLTRMDKEQGGLGIVDPSMWNKAAYCGLVFKIASYEDSLWVK 116
           SFLW+G +M+      S  +    K +GGLG+ +    N  +   LV++I S  +SLW K
Sbjct: 492 SFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTK 551

Query: 115 WTIEHHVRKQHFWTMEIPADC-SWVWRNVLKLRKAAQKF 2
           W  E+ +RK+  W+++      SW+WR +LK+R  A+ F
Sbjct: 552 WVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSF 590