BLASTX nr result

ID: Coptis23_contig00027380 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027380
         (1369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274545.2| PREDICTED: leucine-rich repeat extensin-like...   516   e-144
ref|XP_002514492.1| LRX2, putative [Ricinus communis] gi|2235463...   511   e-142
ref|XP_002308141.1| predicted protein [Populus trichocarpa] gi|2...   503   e-140
ref|XP_002331387.1| predicted protein [Populus trichocarpa] gi|2...   502   e-140
dbj|BAF48663.1| leucine-rich repeat/extensin [Nicotiana plumbagi...   490   e-136

>ref|XP_002274545.2| PREDICTED: leucine-rich repeat extensin-like protein 2-like [Vitis
            vinifera]
          Length = 610

 Score =  516 bits (1330), Expect = e-144
 Identities = 253/353 (71%), Positives = 293/353 (83%), Gaps = 2/353 (0%)
 Frame = -3

Query: 1070 LTFENPRLRQAYIALQSWKSAIFSDPFNFTANWNGPNVCSYGGVYCAP-LPGSNVVVVAG 894
            L FENPRLRQAYIALQ+WK+AIFSDPFNFT+NW GP VCSY GVYCAP L   ++ VVAG
Sbjct: 37   LKFENPRLRQAYIALQAWKTAIFSDPFNFTSNWVGPQVCSYMGVYCAPSLSNPSLKVVAG 96

Query: 893  IDLNHADIAGYLPQELGYLEDLALFHLNSNRFCGVVPETFQRLKLLHELDLSNNRFAGPF 714
            IDLNHADIAGYLP ELG L DLALFHLNSNRFCG+VP + +R+KLL+ELD+SNNRF G F
Sbjct: 97   IDLNHADIAGYLPSELGLLSDLALFHLNSNRFCGIVPSSLKRMKLLYELDISNNRFVGSF 156

Query: 713  PKAVLSMPALKYLDLRFNEFEGPIPPQLFDKPLDAIFLNDNRFRVGIPKNLGNSPVSVVV 534
            P  VLSMP+LK+LDLRFNEFEGP+P QLF+K LDA+FLNDNRF+ GIP+NLGNSPVSV+V
Sbjct: 157  PNVVLSMPSLKFLDLRFNEFEGPVPSQLFNKDLDAVFLNDNRFQFGIPQNLGNSPVSVLV 216

Query: 533  LANNNLGGCIPSSIGKMANTLNEIILLNDNLTGCIPSEIGLLKQLTVFDVSFNHLQGPLP 354
            LANNNLGGCIP SIGKM  TLNEIIL+NDNLT C+P +IGLLK++TVFDVSFNHLQG LP
Sbjct: 217  LANNNLGGCIPGSIGKMGKTLNEIILMNDNLTSCLPPQIGLLKEVTVFDVSFNHLQGSLP 276

Query: 353  PRVTQMKSLEQLDIAQNSLTGALPPALCSSTTLPNLDNFTYSYNYFTSDGN-CASSTGRL 177
            P + +MKSLEQLD+A NS TGA+PP++C    LP L+NFTYS+NYFT +   CA+ TG  
Sbjct: 277  PAIGKMKSLEQLDVAHNSFTGAIPPSICQ---LPRLENFTYSFNYFTGEAPVCAAITG-- 331

Query: 176  VTDGRKNCIPREPMQRSLRECSSAAAKPVDCSKFKCDGNNMSSGGGVGHWGSP 18
              DGR+NCIP +  QRS   CSS AA+PVDCSK KC G + ++GG  G  GSP
Sbjct: 332  --DGRQNCIPGKTDQRSSSMCSSQAARPVDCSKSKCGGGSTNAGGSPG--GSP 380


>ref|XP_002514492.1| LRX2, putative [Ricinus communis] gi|223546391|gb|EEF47892.1| LRX2,
            putative [Ricinus communis]
          Length = 766

 Score =  511 bits (1317), Expect = e-142
 Identities = 252/357 (70%), Positives = 289/357 (80%), Gaps = 3/357 (0%)
 Frame = -3

Query: 1064 FENPRLRQAYIALQSWKSAIFSDPFNFTANWNGPNVCSYGGVYCAPLPGS-NVVVVAGID 888
            FENPRL QAYIALQ+ K +IFSDPFNFT NW GPNVCSY GV+CAP P +  + VVAGID
Sbjct: 45   FENPRLGQAYIALQALKQSIFSDPFNFTTNWKGPNVCSYMGVFCAPSPSNPKIRVVAGID 104

Query: 887  LNHADIAGYLPQELGYLEDLALFHLNSNRFCGVVPETFQRLKLLHELDLSNNRFAGPFPK 708
            LNHADIAGYLP ELG L DLALFHLNSNRFCGVVP TF++LKLLHELDLSNNRF G FPK
Sbjct: 105  LNHADIAGYLPPELGLLTDLALFHLNSNRFCGVVPATFRKLKLLHELDLSNNRFVGKFPK 164

Query: 707  AVLSMPALKYLDLRFNEFEGPIPPQLFDKPLDAIFLNDNRFRVGIPKNLGNSPVSVVVLA 528
             +LS+P+LKYLDLRFNEFEG +P  LFD+PLDAIFLNDNRF+ GIP+NLGNSPVSV+VLA
Sbjct: 165  VLLSLPSLKYLDLRFNEFEGSVPSNLFDRPLDAIFLNDNRFQFGIPENLGNSPVSVLVLA 224

Query: 527  NNNLGGCIPSSIGKMANTLNEIILLNDNLTGCIPSEIGLLKQLTVFDVSFNHLQGPLPPR 348
            NNNLGGCIP SIG M  TLNEIIL+NDNLTGC+P EIGLLK+LTVFDVSFN+LQG LP  
Sbjct: 225  NNNLGGCIPGSIGNMGKTLNEIILMNDNLTGCLPPEIGLLKELTVFDVSFNNLQGSLPSS 284

Query: 347  VTQMKSLEQLDIAQNSLTGALPPALCSSTTLPNLDNFTYSYNYFTSDG-NCASSTG-RLV 174
            +  MK +EQLDIA NS TG +P ++C    LP+L NFTYS+NYFT +  +CA+  G R++
Sbjct: 285  IGNMKKVEQLDIAHNSFTGVVPASICQ---LPSLQNFTYSFNYFTGEAPSCAAIGGSRVL 341

Query: 173  TDGRKNCIPREPMQRSLRECSSAAAKPVDCSKFKCDGNNMSSGGGVGHWGSPFPVPR 3
            T G KNCIP +  QRS +ECSS  A+PV+CSKFKC G++   GGG G      P PR
Sbjct: 342  TKGTKNCIPGKMDQRSAKECSSEKARPVNCSKFKCGGSSGGGGGGGGSGSGSSPSPR 398


>ref|XP_002308141.1| predicted protein [Populus trichocarpa] gi|222854117|gb|EEE91664.1|
            predicted protein [Populus trichocarpa]
          Length = 525

 Score =  503 bits (1296), Expect = e-140
 Identities = 243/336 (72%), Positives = 283/336 (84%), Gaps = 2/336 (0%)
 Frame = -3

Query: 1070 LTFENPRLRQAYIALQSWKSAIFSDPFNFTANWNGPNVCSYGGVYCAPLPGSNVV-VVAG 894
            L FENPR+R+AYIALQSWK AI+SDP NFTANW G +VCSY G++CAP P +  V VVAG
Sbjct: 42   LKFENPRIRRAYIALQSWKQAIYSDPLNFTANWKGSDVCSYMGIFCAPSPQNKKVRVVAG 101

Query: 893  IDLNHADIAGYLPQELGYLEDLALFHLNSNRFCGVVPETFQRLKLLHELDLSNNRFAGPF 714
            IDLNHADIAGYLP ELG L DLALFH+NSNRFCGVVP +F ++KLLHELDLSNNRF G F
Sbjct: 102  IDLNHADIAGYLPTELGLLTDLALFHINSNRFCGVVPNSFSKMKLLHELDLSNNRFVGKF 161

Query: 713  PKAVLSMPALKYLDLRFNEFEGPIPPQLFDKPLDAIFLNDNRFRVGIPKNLGNSPVSVVV 534
            PK VLS+P+LKYLDLRFNEFEG +P QLFDKPLDAIFLNDNRF+ GIP+NLGNSPVSV+V
Sbjct: 162  PKVVLSLPSLKYLDLRFNEFEGSVPSQLFDKPLDAIFLNDNRFQFGIPENLGNSPVSVLV 221

Query: 533  LANNNLGGCIPSSIGKMANTLNEIILLNDNLTGCIPSEIGLLKQLTVFDVSFNHLQGPLP 354
             ANNNLGGCIP SIGKM  TLNEIIL+NDNLTGC+P +IG+LK++TVFDVSFNHLQG LP
Sbjct: 222  FANNNLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKEVTVFDVSFNHLQGSLP 281

Query: 353  PRVTQMKSLEQLDIAQNSLTGALPPALCSSTTLPNLDNFTYSYNYFTSDG-NCASSTGRL 177
              +  MKS+EQLDIA NS TGA+P ++C    LPNL NFT+S+NYFT +  +CA+  G  
Sbjct: 282  SSIGNMKSVEQLDIAHNSFTGAIPASVCQ---LPNLQNFTFSFNYFTGEAPSCAAIGG-- 336

Query: 176  VTDGRKNCIPREPMQRSLRECSSAAAKPVDCSKFKC 69
            V++G +NCIP +  QRS ++CSS AA+PVDCSKFKC
Sbjct: 337  VSNGTQNCIPGKTNQRSAKQCSSEAARPVDCSKFKC 372


>ref|XP_002331387.1| predicted protein [Populus trichocarpa] gi|222873601|gb|EEF10732.1|
            predicted protein [Populus trichocarpa]
          Length = 481

 Score =  502 bits (1293), Expect = e-140
 Identities = 251/380 (66%), Positives = 295/380 (77%), Gaps = 6/380 (1%)
 Frame = -3

Query: 1169 PPTSSSYKLLLFTIFVVLIQILSSTEAAPG-----GGALTFENPRLRQAYIALQSWKSAI 1005
            PP S     LL +    L QI S+              L FENPR+R+AYIALQSWK AI
Sbjct: 3    PPRSFLILFLLVSTPSFLFQISSAAHEDGDHDINVDSTLKFENPRIRRAYIALQSWKQAI 62

Query: 1004 FSDPFNFTANWNGPNVCSYGGVYCAPLPGSNVV-VVAGIDLNHADIAGYLPQELGYLEDL 828
            FSDPFNFTANWNG +VCSY GV+CAP P +  + VVAGIDLNHADIAGYLP ELG + DL
Sbjct: 63   FSDPFNFTANWNGSDVCSYMGVFCAPSPKNKKIRVVAGIDLNHADIAGYLPTELGLIIDL 122

Query: 827  ALFHLNSNRFCGVVPETFQRLKLLHELDLSNNRFAGPFPKAVLSMPALKYLDLRFNEFEG 648
            AL H+NSNRFCGVVP +F+++KLLHELDLSNNR  G FPK V+S+P+LKYLDLRFNEFEG
Sbjct: 123  ALLHINSNRFCGVVPSSFRKMKLLHELDLSNNRLMGKFPKVVVSLPSLKYLDLRFNEFEG 182

Query: 647  PIPPQLFDKPLDAIFLNDNRFRVGIPKNLGNSPVSVVVLANNNLGGCIPSSIGKMANTLN 468
             +P QLFDKPLDAIFLNDNRFR GIP+NLGNSP SV+VLANNNLGGCIP SIGKM+ TLN
Sbjct: 183  SVPSQLFDKPLDAIFLNDNRFRFGIPENLGNSPASVLVLANNNLGGCIPGSIGKMSKTLN 242

Query: 467  EIILLNDNLTGCIPSEIGLLKQLTVFDVSFNHLQGPLPPRVTQMKSLEQLDIAQNSLTGA 288
            EIIL+NDNLTGC+P +IG+LK++TVFDVSFNHLQG LP  +  MKS+EQLDIA NS TG 
Sbjct: 243  EIILMNDNLTGCLPPQIGMLKEVTVFDVSFNHLQGALPSSIGNMKSVEQLDIAHNSFTGV 302

Query: 287  LPPALCSSTTLPNLDNFTYSYNYFTSDGNCASSTGRLVTDGRKNCIPREPMQRSLRECSS 108
            +P    S   LPNL NFTYS+NYFT +    ++ G  V++G +NCIP +  QRS ++CSS
Sbjct: 303  VP---ASVYQLPNLQNFTYSFNYFTGEAPSCAAIG-AVSNGTQNCIPGKMNQRSAKQCSS 358

Query: 107  AAAKPVDCSKFKCDGNNMSS 48
             AA+P+DCSKFKC G+  +S
Sbjct: 359  EAARPIDCSKFKCGGSGGAS 378


>dbj|BAF48663.1| leucine-rich repeat/extensin [Nicotiana plumbaginifolia]
            gi|127058167|dbj|BAF48664.1| leucine-rich repeat/extensin
            [Nicotiana plumbaginifolia]
          Length = 725

 Score =  490 bits (1261), Expect = e-136
 Identities = 234/336 (69%), Positives = 279/336 (83%), Gaps = 2/336 (0%)
 Frame = -3

Query: 1070 LTFENPRLRQAYIALQSWKSAIFSDPFNFTANWNGPNVCSYGGVYCAP-LPGSNVVVVAG 894
            L+FENP+LR AYIALQ+WK+A+FSDPFNFTANW GPNVCSYGGV+CA  L   ++ VVAG
Sbjct: 43   LSFENPKLRVAYIALQTWKAAMFSDPFNFTANWTGPNVCSYGGVFCAQSLTNDSIRVVAG 102

Query: 893  IDLNHADIAGYLPQELGYLEDLALFHLNSNRFCGVVPETFQRLKLLHELDLSNNRFAGPF 714
            IDLNHADIAGYL  ELG L DL LFHLNSNRFCG+VP+TF  LKLL ELDLSNNRF G F
Sbjct: 103  IDLNHADIAGYLVPELGLLTDLVLFHLNSNRFCGIVPKTFSHLKLLRELDLSNNRFVGGF 162

Query: 713  PKAVLSMPALKYLDLRFNEFEGPIPPQLFDKPLDAIFLNDNRFRVGIPKNLGNSPVSVVV 534
            PK VLS+P+LK+LDLRFN+FEGP+P +LFDK LDA+FLNDNRFR GIP+NLGNSPVSV+V
Sbjct: 163  PKVVLSLPSLKFLDLRFNDFEGPVPSKLFDKDLDALFLNDNRFRFGIPENLGNSPVSVLV 222

Query: 533  LANNNLGGCIPSSIGKMANTLNEIILLNDNLTGCIPSEIGLLKQLTVFDVSFNHLQGPLP 354
             ANNNLGGCIP+SIGKM+NTLNE+IL+NDNLTGC+P EIG+LK+LTVFDVSFN +QGPLP
Sbjct: 223  FANNNLGGCIPASIGKMSNTLNELILMNDNLTGCLPMEIGMLKKLTVFDVSFNKIQGPLP 282

Query: 353  PRVTQMKSLEQLDIAQNSLTGALPPALCSSTTLPNLDNFTYSYNYFTSDGN-CASSTGRL 177
              V++M+S+EQL++A N LTG +P ++C    LP L NFTYS+NYFT +   CA++    
Sbjct: 283  STVSRMRSVEQLNVAHNKLTGVIPASICQ---LPRLQNFTYSFNYFTGEAPVCAATRSGR 339

Query: 176  VTDGRKNCIPREPMQRSLRECSSAAAKPVDCSKFKC 69
            + DG +NCI  +  QRS +ECSS  AKP DC K +C
Sbjct: 340  IVDGEENCIAGKEDQRSAKECSSDDAKPYDCRKSQC 375


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