BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027379
         (322 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN10530.1| Lhca5 protein [Gentiana lutea]                         174   9e-42
ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4...   174   9e-42
ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Po...   171   7e-41
gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]           167   8e-40
ref|XP_002510221.1| chlorophyll A/B binding protein, putative [R...   167   8e-40

>gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
          Length = 272

 Score =  174 bits (440), Expect = 9e-42
 Identities = 83/99 (83%), Positives = 90/99 (90%), Gaps = 1/99 (1%)
 Frame = -1

Query: 295 TLVRAQ-RATWLPGLDPPSYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHARFAMAG 119
           T+VRAQ R TWLPGLDPP YLDGTL GDFGFDPLGLGEDPESLKWYVQAELVH+RFAMAG
Sbjct: 57  TVVRAQQRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAG 116

Query: 118 VAGILLTDVLRVTGISNIPVWYEAGAMRFGFASTRTLFI 2
           VAGIL TD+LR TG+SN+PVWYEAGA +F FA+T TLFI
Sbjct: 117 VAGILFTDLLRTTGLSNLPVWYEAGATKFQFANTTTLFI 155


>ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
           vinifera] gi|302142320|emb|CBI19523.3| unnamed protein
           product [Vitis vinifera]
          Length = 264

 Score =  174 bits (440), Expect = 9e-42
 Identities = 83/102 (81%), Positives = 94/102 (92%), Gaps = 1/102 (0%)
 Frame = -1

Query: 304 SYRTLVRAQ-RATWLPGLDPPSYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHARFA 128
           S+ T+V+AQ R TWLPGLDPP YL+GTL GDFGFDPLGLGEDPE+L+WYVQAELVHARFA
Sbjct: 46  SHGTVVQAQQRPTWLPGLDPPPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFA 105

Query: 127 MAGVAGILLTDVLRVTGISNIPVWYEAGAMRFGFASTRTLFI 2
           MAGVAGIL+TD+LRVTGISN+PVWYEAGA++F FAST  LFI
Sbjct: 106 MAGVAGILVTDLLRVTGISNLPVWYEAGAVKFEFASTEALFI 147


>ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
           gi|222835451|gb|EEE73886.1| light-harvesting complex I
           protein Lhca5 [Populus trichocarpa]
          Length = 266

 Score =  171 bits (432), Expect = 7e-41
 Identities = 79/93 (84%), Positives = 85/93 (91%)
 Frame = -1

Query: 280 QRATWLPGLDPPSYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHARFAMAGVAGILL 101
           QR TWLPGLDPP YLDGTL GDFGFDPLGLGEDP+SLKWYVQAELVHARFAMAGVAGIL 
Sbjct: 56  QRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILF 115

Query: 100 TDVLRVTGISNIPVWYEAGAMRFGFASTRTLFI 2
           TD+LRVTGI  +PVWYEAGA++F FASTRTL +
Sbjct: 116 TDLLRVTGIRKLPVWYEAGAVKFEFASTRTLIV 148


>gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
          Length = 315

 Score =  167 bits (423), Expect = 8e-40
 Identities = 80/106 (75%), Positives = 91/106 (85%), Gaps = 3/106 (2%)
 Frame = -1

Query: 313 TPRSYRTLVRA---QRATWLPGLDPPSYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELV 143
           +PR+    VRA   QRATWLPGLDPP YLDGTLPGDFGFDPLGLGE+PE+LKWYVQAELV
Sbjct: 93  SPRARVVAVRAAGTQRATWLPGLDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELV 152

Query: 142 HARFAMAGVAGILLTDVLRVTGISNIPVWYEAGAMRFGFASTRTLF 5
           H RFAMAGVAGIL TD+LRV+G S++PVW+EAGA +F FA+T  LF
Sbjct: 153 HCRFAMAGVAGILFTDLLRVSGNSDLPVWFEAGAAKFDFANTTALF 198


>ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
           gi|223550922|gb|EEF52408.1| chlorophyll A/B binding
           protein, putative [Ricinus communis]
          Length = 269

 Score =  167 bits (423), Expect = 8e-40
 Identities = 82/108 (75%), Positives = 92/108 (85%), Gaps = 2/108 (1%)
 Frame = -1

Query: 319 SHTPRSY-RTLVRAQ-RATWLPGLDPPSYLDGTLPGDFGFDPLGLGEDPESLKWYVQAEL 146
           S + R Y R +VRAQ R TWLPGLD P YLDGTL GD+GFDPLGLGEDPESLKWYVQAEL
Sbjct: 44  STSSRCYTRAVVRAQQRPTWLPGLDSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAEL 103

Query: 145 VHARFAMAGVAGILLTDVLRVTGISNIPVWYEAGAMRFGFASTRTLFI 2
           VHARFAM G+AGIL TD+LRVTGI  +PVWYEAGA+++ FASTRTL +
Sbjct: 104 VHARFAMLGIAGILFTDLLRVTGIRKLPVWYEAGAVKYEFASTRTLLV 151