BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027372
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containi...   108   6e-25
emb|CBI24939.3| unnamed protein product [Vitis vinifera]              108   6e-25
ref|XP_002517779.1| pentatricopeptide repeat-containing protein,...   106   1e-24
ref|XP_003599420.1| Pentatricopeptide repeat-containing protein ...   101   1e-23
ref|XP_002313317.1| predicted protein [Populus trichocarpa] gi|2...   103   3e-23

>ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Vitis vinifera]
          Length = 538

 Score =  108 bits (269), Expect(2) = 6e-25
 Identities = 50/74 (67%), Positives = 60/74 (81%)
 Frame = -1

Query: 320 LVNFYSKTEELNKISLILRQVENSDVVLDTPIFNCVISAYGQVGELQRMEEMFVEMKRRK 141
           LV+ YSK   L K+  ILRQ+ENSDV LDTP FNCV+SAYGQ G+++RM E+F+ MK RK
Sbjct: 381 LVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERK 440

Query: 140 CMPDNVTFATMIQA 99
           C PDN+TFATMIQA
Sbjct: 441 CKPDNITFATMIQA 454



 Score = 30.8 bits (68), Expect(2) = 6e-25
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 96  QAYTVQGMTESAQQLETSLLNIKENS 19
           QAY  QGM E+AQ LE +++  K  S
Sbjct: 453 QAYNAQGMIEAAQNLEVNMITTKNKS 478


>emb|CBI24939.3| unnamed protein product [Vitis vinifera]
          Length = 485

 Score =  108 bits (269), Expect(2) = 6e-25
 Identities = 50/74 (67%), Positives = 60/74 (81%)
 Frame = -1

Query: 320 LVNFYSKTEELNKISLILRQVENSDVVLDTPIFNCVISAYGQVGELQRMEEMFVEMKRRK 141
           LV+ YSK   L K+  ILRQ+ENSDV LDTP FNCV+SAYGQ G+++RM E+F+ MK RK
Sbjct: 381 LVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERK 440

Query: 140 CMPDNVTFATMIQA 99
           C PDN+TFATMIQA
Sbjct: 441 CKPDNITFATMIQA 454



 Score = 30.8 bits (68), Expect(2) = 6e-25
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 96  QAYTVQGMTESAQQLETSLLNIKENS 19
           QAY  QGM E+AQ LE +++  K  S
Sbjct: 453 QAYNAQGMIEAAQNLEVNMITTKNKS 478


>ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543051|gb|EEF44586.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 486

 Score =  106 bits (265), Expect(2) = 1e-24
 Identities = 50/74 (67%), Positives = 62/74 (83%)
 Frame = -1

Query: 320 LVNFYSKTEELNKISLILRQVENSDVVLDTPIFNCVISAYGQVGELQRMEEMFVEMKRRK 141
           LV+ YSK   L K++ ILRQVENSDVVLDT  FNC+I+AYGQ G++ +M E+F+EM+ R+
Sbjct: 381 LVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQAGDVDKMAELFLEMRERE 440

Query: 140 CMPDNVTFATMIQA 99
           CMPDNVTFATMIQA
Sbjct: 441 CMPDNVTFATMIQA 454



 Score = 31.6 bits (70), Expect(2) = 1e-24
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = -3

Query: 96  QAYTVQGMTESAQQLETSLLNIKENS 19
           QAY  QGMTE+AQ LE  +L  K NS
Sbjct: 453 QAYRGQGMTEAAQALEKMMLAAKGNS 478


>ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355488468|gb|AES69671.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 511

 Score =  101 bits (252), Expect(2) = 1e-23
 Identities = 48/74 (64%), Positives = 57/74 (77%)
 Frame = -1

Query: 320 LVNFYSKTEELNKISLILRQVENSDVVLDTPIFNCVISAYGQVGELQRMEEMFVEMKRRK 141
           LVN YSK   + KI  ILR VENSDV+LDTP FNC+ISAYGQVG+L++M E+F+ M+ RK
Sbjct: 385 LVNAYSKAGLIRKIDSILRHVENSDVILDTPFFNCIISAYGQVGDLKKMGELFLAMRARK 444

Query: 140 CMPDNVTFATMIQA 99
           C PD  TF  MIQA
Sbjct: 445 CEPDRTTFTCMIQA 458



 Score = 32.7 bits (73), Expect(2) = 1e-23
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = -3

Query: 96  QAYTVQGMTESAQQLETSLLNIKENS 19
           QAY  QG+TE+A+ LET +++ K++S
Sbjct: 457 QAYNTQGITEAAKNLETMMISAKDSS 482


>ref|XP_002313317.1| predicted protein [Populus trichocarpa] gi|222849725|gb|EEE87272.1|
           predicted protein [Populus trichocarpa]
          Length = 474

 Score =  103 bits (258), Expect(2) = 3e-23
 Identities = 47/74 (63%), Positives = 61/74 (82%)
 Frame = -1

Query: 320 LVNFYSKTEELNKISLILRQVENSDVVLDTPIFNCVISAYGQVGELQRMEEMFVEMKRRK 141
           LV+ YSK   + K+  ILRQVENSDV+LDTP FNCVISAYG+ G++++M E+F+ M+ RK
Sbjct: 368 LVSAYSKAGHIMKVDSILRQVENSDVILDTPFFNCVISAYGRAGDIEKMSELFLGMEGRK 427

Query: 140 CMPDNVTFATMIQA 99
           C PD++TFATMIQA
Sbjct: 428 CKPDSITFATMIQA 441



 Score = 29.3 bits (64), Expect(2) = 3e-23
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 96  QAYTVQGMTESAQQLETSLLNIKENS 19
           QAY  QGM E+AQ +E  ++  ++NS
Sbjct: 440 QAYNAQGMIEAAQGMENMMIATRKNS 465