BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027371
         (426 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24939.3| unnamed protein product [Vitis vinifera]              137   7e-31
ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containi...   133   1e-29
ref|XP_002517779.1| pentatricopeptide repeat-containing protein,...   130   9e-29
ref|XP_002313317.1| predicted protein [Populus trichocarpa] gi|2...   127   1e-27
ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containi...   126   2e-27

>emb|CBI24939.3| unnamed protein product [Vitis vinifera]
          Length = 485

 Score =  137 bits (346), Expect = 7e-31
 Identities = 66/104 (63%), Positives = 81/104 (77%)
 Frame = +1

Query: 1   LVNFYSKAEELNKISLILRQVENSDVVLDTPFFNCVISAYGQVGELQRMEEMFVEMKRRK 180
           LV+ YSKA  L K+  ILRQ+ENSDV LDTPFFNCV+SAYGQ G+++RM E+F+ MK RK
Sbjct: 381 LVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERK 440

Query: 181 CMPDNITFATMIQAYTAQGMTESAQQLETSLLNCNTVTVHRLVG 312
           C PDNITFATMIQAY AQGM E+AQ LE +++     +  RL+G
Sbjct: 441 CKPDNITFATMIQAYNAQGMIEAAQNLEVNMITTKNKSGTRLIG 484


>ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Vitis vinifera]
          Length = 538

 Score =  133 bits (335), Expect = 1e-29
 Identities = 63/92 (68%), Positives = 76/92 (82%)
 Frame = +1

Query: 1   LVNFYSKAEELNKISLILRQVENSDVVLDTPFFNCVISAYGQVGELQRMEEMFVEMKRRK 180
           LV+ YSKA  L K+  ILRQ+ENSDV LDTPFFNCV+SAYGQ G+++RM E+F+ MK RK
Sbjct: 381 LVSAYSKAGYLKKVDSILRQIENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERK 440

Query: 181 CMPDNITFATMIQAYTAQGMTESAQQLETSLL 276
           C PDNITFATMIQAY AQGM E+AQ LE +++
Sbjct: 441 CKPDNITFATMIQAYNAQGMIEAAQNLEVNMI 472


>ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543051|gb|EEF44586.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 486

 Score =  130 bits (328), Expect = 9e-29
 Identities = 62/92 (67%), Positives = 77/92 (83%)
 Frame = +1

Query: 1   LVNFYSKAEELNKISLILRQVENSDVVLDTPFFNCVISAYGQVGELQRMEEMFVEMKRRK 180
           LV+ YSKA  L K++ ILRQVENSDVVLDT FFNC+I+AYGQ G++ +M E+F+EM+ R+
Sbjct: 381 LVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQAGDVDKMAELFLEMRERE 440

Query: 181 CMPDNITFATMIQAYTAQGMTESAQQLETSLL 276
           CMPDN+TFATMIQAY  QGMTE+AQ LE  +L
Sbjct: 441 CMPDNVTFATMIQAYRGQGMTEAAQALEKMML 472


>ref|XP_002313317.1| predicted protein [Populus trichocarpa] gi|222849725|gb|EEE87272.1|
           predicted protein [Populus trichocarpa]
          Length = 474

 Score =  127 bits (318), Expect = 1e-27
 Identities = 59/92 (64%), Positives = 76/92 (82%)
 Frame = +1

Query: 1   LVNFYSKAEELNKISLILRQVENSDVVLDTPFFNCVISAYGQVGELQRMEEMFVEMKRRK 180
           LV+ YSKA  + K+  ILRQVENSDV+LDTPFFNCVISAYG+ G++++M E+F+ M+ RK
Sbjct: 368 LVSAYSKAGHIMKVDSILRQVENSDVILDTPFFNCVISAYGRAGDIEKMSELFLGMEGRK 427

Query: 181 CMPDNITFATMIQAYTAQGMTESAQQLETSLL 276
           C PD+ITFATMIQAY AQGM E+AQ +E  ++
Sbjct: 428 CKPDSITFATMIQAYNAQGMIEAAQGMENMMI 459


>ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Glycine max]
          Length = 481

 Score =  126 bits (317), Expect = 2e-27
 Identities = 59/104 (56%), Positives = 78/104 (75%)
 Frame = +1

Query: 1   LVNFYSKAEELNKISLILRQVENSDVVLDTPFFNCVISAYGQVGELQRMEEMFVEMKRRK 180
           LV+ YSK   ++K+  I+R VENSDVVLDTPFFNC+ISAYGQ G L++M E+F+ M+ RK
Sbjct: 377 LVSAYSKVGCIDKVDSIMRHVENSDVVLDTPFFNCIISAYGQAGNLKKMGELFLAMRERK 436

Query: 181 CMPDNITFATMIQAYTAQGMTESAQQLETSLLNCNTVTVHRLVG 312
           C PDNITFA MIQ+Y  QGMTE+ Q LE  +++  +    +L+G
Sbjct: 437 CEPDNITFACMIQSYNTQGMTEAVQNLENMMISAKSSLGTKLIG 480