BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027355
         (612 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEL98963.1| chloroplast stem-loop binding protein, partial [S...    80   1e-21
gb|AEL98962.1| chloroplast stem-loop binding protein, partial [S...    80   1e-21
gb|ADQ57386.1| CSP41A-X protein [Silene latifolia]                     80   1e-21
gb|ADQ57385.1| CSP41A protein [Silene vulgaris]                        80   1e-21
gb|ADQ57387.1| CSP41A-Y protein [Silene latifolia]                     79   5e-21

>gb|AEL98963.1| chloroplast stem-loop binding protein, partial [Silene latifolia]
          Length = 384

 Score = 80.5 bits (197), Expect(2) = 1e-21
 Identities = 35/63 (55%), Positives = 45/63 (71%)
 Frame = -3

Query: 592 ADGSHVAVDKYVADVFSSWAEFLP*HIIGSGNSKDCEEWFFHRIVHD*PVEFRDQGCNYQ 413
           AD SHVAV++Y++  FSSWA F P ++IGSGN+KDCEEWFF RIV D P+     G    
Sbjct: 191 ADASHVAVEEYISQTFSSWASFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLT 250

Query: 412 HLS 404
           ++S
Sbjct: 251 NIS 253



 Score = 48.1 bits (113), Expect(2) = 1e-21
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = -1

Query: 417 TNISHVRDLSSMLTSAVEDPIVSSRKIFNCV 325
           TNISHV+DLSSMLT AVE+P  +S  IFNCV
Sbjct: 250 TNISHVKDLSSMLTLAVENPASASGNIFNCV 280


>gb|AEL98962.1| chloroplast stem-loop binding protein, partial [Silene latifolia]
          Length = 384

 Score = 80.5 bits (197), Expect(2) = 1e-21
 Identities = 35/63 (55%), Positives = 45/63 (71%)
 Frame = -3

Query: 592 ADGSHVAVDKYVADVFSSWAEFLP*HIIGSGNSKDCEEWFFHRIVHD*PVEFRDQGCNYQ 413
           AD SHVAV++Y++  FSSWA F P ++IGSGN+KDCEEWFF RIV D P+     G    
Sbjct: 191 ADASHVAVEEYISQTFSSWASFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLT 250

Query: 412 HLS 404
           ++S
Sbjct: 251 NIS 253



 Score = 48.1 bits (113), Expect(2) = 1e-21
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = -1

Query: 417 TNISHVRDLSSMLTSAVEDPIVSSRKIFNCV 325
           TNISHV+DLSSMLT AVE+P  +S  IFNCV
Sbjct: 250 TNISHVKDLSSMLTLAVENPASASGNIFNCV 280


>gb|ADQ57386.1| CSP41A-X protein [Silene latifolia]
          Length = 306

 Score = 80.5 bits (197), Expect(2) = 1e-21
 Identities = 35/63 (55%), Positives = 45/63 (71%)
 Frame = -3

Query: 592 ADGSHVAVDKYVADVFSSWAEFLP*HIIGSGNSKDCEEWFFHRIVHD*PVEFRDQGCNYQ 413
           AD SHVAV++Y++  FSSWA F P ++IGSGN+KDCEEWFF RIV D P+     G    
Sbjct: 112 ADASHVAVEEYISQTFSSWASFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLT 171

Query: 412 HLS 404
           ++S
Sbjct: 172 NIS 174



 Score = 48.1 bits (113), Expect(2) = 1e-21
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = -1

Query: 417 TNISHVRDLSSMLTSAVEDPIVSSRKIFNCV 325
           TNISHV+DLSSMLT AVE+P  +S  IFNCV
Sbjct: 171 TNISHVKDLSSMLTLAVENPASASGNIFNCV 201


>gb|ADQ57385.1| CSP41A protein [Silene vulgaris]
          Length = 306

 Score = 80.5 bits (197), Expect(2) = 1e-21
 Identities = 35/63 (55%), Positives = 45/63 (71%)
 Frame = -3

Query: 592 ADGSHVAVDKYVADVFSSWAEFLP*HIIGSGNSKDCEEWFFHRIVHD*PVEFRDQGCNYQ 413
           AD SHVAV++Y++  FSSWA F P ++IGSGN+KDCEEWFF RIV D P+     G    
Sbjct: 112 ADASHVAVEEYISQTFSSWASFRPQYMIGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLT 171

Query: 412 HLS 404
           ++S
Sbjct: 172 NIS 174



 Score = 48.1 bits (113), Expect(2) = 1e-21
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = -1

Query: 417 TNISHVRDLSSMLTSAVEDPIVSSRKIFNCV 325
           TNISHV+DLSSMLT AVE+P  +S  IFNCV
Sbjct: 171 TNISHVKDLSSMLTLAVENPTSASGNIFNCV 201


>gb|ADQ57387.1| CSP41A-Y protein [Silene latifolia]
          Length = 306

 Score = 78.6 bits (192), Expect(2) = 5e-21
 Identities = 34/63 (53%), Positives = 44/63 (69%)
 Frame = -3

Query: 592 ADGSHVAVDKYVADVFSSWAEFLP*HIIGSGNSKDCEEWFFHRIVHD*PVEFRDQGCNYQ 413
           AD SHVAV++Y++  FSSWA F P ++ GSGN+KDCEEWFF RIV D P+     G    
Sbjct: 112 ADASHVAVEEYISQTFSSWASFRPQYMTGSGNNKDCEEWFFDRIVRDRPIPIPGSGMQLT 171

Query: 412 HLS 404
           ++S
Sbjct: 172 NIS 174



 Score = 48.1 bits (113), Expect(2) = 5e-21
 Identities = 23/31 (74%), Positives = 26/31 (83%)
 Frame = -1

Query: 417 TNISHVRDLSSMLTSAVEDPIVSSRKIFNCV 325
           TNISHV+DLSSMLT AVE+P  +S  IFNCV
Sbjct: 171 TNISHVKDLSSMLTLAVENPASASGNIFNCV 201