BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027352
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]...    62   6e-08
ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein...    61   8e-08
ref|XP_002516292.1| tpr repeat nuclear phosphoprotein, putative ...    61   8e-08
ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein...    61   1e-07
ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein...    60   1e-07

>ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]
           gi|222833309|gb|EEE71786.1| PAF1 complex component
           [Populus trichocarpa]
          Length = 1056

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = -1

Query: 108 MIGALELENDDWLKAKETLRAAREATDGKDSYSALS 1
           M+G LEL+NDDW+KAKET RAA EATDGKDSY+ LS
Sbjct: 595 MLGDLELKNDDWVKAKETFRAASEATDGKDSYATLS 630


>ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
           max]
          Length = 1086

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 27/36 (75%), Positives = 34/36 (94%)
 Frame = -1

Query: 108 MIGALELENDDWLKAKETLRAAREATDGKDSYSALS 1
           M+G LEL+NDDW+KAKETLRAA +AT+GKDSY++LS
Sbjct: 594 MLGELELKNDDWVKAKETLRAASDATEGKDSYASLS 629


>ref|XP_002516292.1| tpr repeat nuclear phosphoprotein, putative [Ricinus communis]
           gi|223544778|gb|EEF46294.1| tpr repeat nuclear
           phosphoprotein, putative [Ricinus communis]
          Length = 1065

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = -1

Query: 108 MIGALELENDDWLKAKETLRAAREATDGKDSYSALS 1
           M+G LEL+NDDW+KAKET RAA EATDGKDSY+ LS
Sbjct: 571 MLGDLELKNDDWVKAKETFRAASEATDGKDSYAILS 606


>ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
           max]
          Length = 1088

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 27/36 (75%), Positives = 32/36 (88%)
 Frame = -1

Query: 108 MIGALELENDDWLKAKETLRAAREATDGKDSYSALS 1
           M+G LEL+NDDW+KAKETLR A +ATDGKDSY+ LS
Sbjct: 597 MLGELELKNDDWVKAKETLRTASDATDGKDSYATLS 632


>ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis
           sativus]
          Length = 1074

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 27/36 (75%), Positives = 32/36 (88%)
 Frame = -1

Query: 108 MIGALELENDDWLKAKETLRAAREATDGKDSYSALS 1
           M+G LEL+NDDW++AKET RAA EATDGKDSY+ LS
Sbjct: 595 MLGELELKNDDWVRAKETFRAAGEATDGKDSYATLS 630