BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027284
         (412 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                 70   2e-10
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               69   3e-10
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]    66   3e-09
emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]    48   3e-08
emb|CAN67073.1| hypothetical protein VITISV_011746 [Vitis vinifera]    56   3e-06

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 49/140 (35%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
 Frame = +2

Query: 2    LHVPHISQNLLSVYRFATDNNCSITFDSLKYVVKDNI*GKMLFQGPHRHDLYPLKLFPHK 181
            L VP  S NLLSVY+F  DN C +TFD   + VKD   GKMLFQGP    LYP       
Sbjct: 651  LLVPQASHNLLSVYKFVYDNWCYLTFDPFGFYVKDLSTGKMLFQGPSEGGLYPFYWNASN 710

Query: 182  KLHXXXXXXXXXXXXXXXVHLHW*KDFICYLACQNWPSILSYV---ILNKIVTSNNLPVE 352
             +                +H               W   L +     L+ +V  N+LPV 
Sbjct: 711  GVSGIAISPTALMIAKADIH--------------TWHRRLGHPSGGTLHSVVHKNHLPVI 756

Query: 353  GH-SVHDFCTSCKLGKSTKL 409
            G+ +    CT+C+LGKS +L
Sbjct: 757  GYVNNMSVCTACQLGKSYRL 776


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 47/136 (34%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
 Frame = +2

Query: 2   LHVPHISQNLLSVYRFATDNNCSITFDSLKYVVKDNI*GKMLFQGPHRHDLYPLKLFPHK 181
           LH P  S NLLSVY+F  DN+C   F    + VKD   GKML+ G   + LYP + FP K
Sbjct: 409 LHCPSASTNLLSVYKFTIDNHCYFIFYPNYFCVKDLKTGKMLYHGKSENGLYPFR-FPSK 467

Query: 182 KLHXXXXXXXXXXXXXXXVHLHW*KDFICYLACQNWPSIL---SYVILNKIVTSNNLPVE 352
                                         ++ + W S L   S  I++K++++  +PV 
Sbjct: 468 TSKVSSSLAYVSSR----------------VSAETWHSRLGHASSTIVSKVLSNKAVPVL 511

Query: 353 GHSVHDFCTSCKLGKS 400
           G S   FC SC LGKS
Sbjct: 512 GSSNFSFCQSCPLGKS 527


>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 48/143 (33%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
 Frame = +2

Query: 2   LHVPHISQNLLSVYRFATDNNCSITFDSLKYVVKDNI*GKMLFQGPHRHDLYPL---KLF 172
           LH P  + NL+S+ +F  DNNC     +  +VVK+N+ G++L QG   + LYPL   K F
Sbjct: 381 LHCPQAATNLISINQFCLDNNCYFILTANGFVVKENLTGRILLQGVVENGLYPLAGCKTF 440

Query: 173 PHKKLHXXXXXXXXXXXXXXXVHLHW*KDFICYLACQNWPSIL---SYVILNKIVTSNNL 343
            HK L                                 W S L   S VI N +  SN L
Sbjct: 441 -HKSLTCLSTTIGVRAN------------------ADTWHSRLGHPSSVIFNSLFHSNKL 481

Query: 344 PVEGHSVH-DFCTSCKLGKSTKL 409
            V+G S   +FC++C+LGK+ +L
Sbjct: 482 SVKGSSTKLEFCSACQLGKAKQL 504


>emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]
          Length = 590

 Score = 47.8 bits (112), Expect(2) = 3e-08
 Identities = 23/58 (39%), Positives = 35/58 (60%)
 Frame = +2

Query: 2   LHVPHISQNLLSVYRFATDNNCSITFDSLKYVVKDNI*GKMLFQGPHRHDLYPLKLFP 175
           L VP I++NL+SV+ F   NN  + F    ++VKD   G++L QGP  + +YP+   P
Sbjct: 357 LCVPTINKNLISVHHFTKQNNVILEFHPTYFLVKDRRTGEILLQGPCENGVYPMPSSP 414



 Score = 35.0 bits (79), Expect(2) = 3e-08
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 234 PCTYIGERTSYVTWHARIGHPSY 302
           P  ++ ERTS   WH R+GHPS+
Sbjct: 418 PIAFVHERTSVTGWHQRLGHPSF 440


>emb|CAN67073.1| hypothetical protein VITISV_011746 [Vitis vinifera]
          Length = 879

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
 Frame = +2

Query: 2   LHVPHISQNLLSVYRFATDNNCSITFDSLKYVVKDNI*GKMLFQGPHRHDLYPLKL--FP 175
           LH P  S NLLS+ +F  DNNC        Y VKD   G  L +G     LYP++L    
Sbjct: 201 LHCPQASANLLSINQFCLDNNCLFILXGTHYFVKDIQTGTTLLEGKSEGGLYPIQLXSMS 260

Query: 176 HKKLHXXXXXXXXXXXXXXXVHLHW*KDFICYLACQNWPSILSYV---ILNKIVTSNNLP 346
             K H                            +   W S L +    I+++++  ++LP
Sbjct: 261 INKSHALSAVVGIK------------------ASVSIWHSRLGHASLPIVSQLLNKHSLP 302

Query: 347 VEG--HSVHDFCTSCKLGKST 403
           VEG  + +H FC SC+LGK +
Sbjct: 303 VEGSVNKMH-FCESCQLGKDS 322