BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027235
         (1094 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat...   132   2e-28
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...   131   3e-28
ref|XP_002453810.1| hypothetical protein SORBIDRAFT_04g018371 [S...   130   7e-28
ref|XP_002439202.1| hypothetical protein SORBIDRAFT_09g002195 [S...   126   1e-26
ref|XP_003550922.1| PREDICTED: putative ribonuclease H protein A...   121   3e-25

>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
          Length = 480

 Score =  132 bits (332), Expect = 2e-28
 Identities = 67/212 (31%), Positives = 114/212 (53%)
 Frame = +3

Query: 345 LGVPLTMGRVTRATLAPMVDKIRKRAAGWVGKMLSFKGRVVLAKQVLNSILIHNMAIYKW 524
           LG P+  G++       +VD+I+ + A W   +LS  GRV L K +++ +L+++  IY W
Sbjct: 225 LGCPIFKGKLKGIYFQSIVDRIKVKFAIWKCTLLSIMGRVELVKSIIHGMLVYSFQIYMW 284

Query: 525 PVSVIKECEGIIRNFIWSGSPSERKFITVK*QKVCRPEEEGGLGLCKLRDINLSMLMKLA 704
           P  ++ + +  I+NFIWSG     K  TV  + +CRP   GGL +     IN S+++ LA
Sbjct: 285 PRRLLHQLDSWIKNFIWSGDIYTHKVCTVSWKVMCRPWAAGGLDIKPTCLINESLILLLA 344

Query: 705 WSLLNNTSDWSEFMNGKYRNKSGGWSSHKKSTVWTGLQWALREMDTHQGWIIGKGENISL 884
           W      S W+  M+ ++         +  S++W G++  L  + ++  WI+G G NI+L
Sbjct: 345 WQFSTADSQWAALMHHRFLKHGTPLQHYFLSSMWGGIKEHLSTISSNSIWIVGTGANINL 404

Query: 885 WRDNWIGDVIIDNFIQDKRLLQKLKAPLSACI 980
           W DNW+G  ++D+      L  K +A ++  I
Sbjct: 405 WTDNWLGIRLVDSLNISPTLHTKFRASVADVI 436


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score =  131 bits (330), Expect = 3e-28
 Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 7/200 (3%)
 Frame = +3

Query: 333 LRENLGVPLTMGRVTRATLAPMVDKIRKRAAGWVGKMLSFKGRVVLAKQVLNSILIHNMA 512
           L + LG+P+   R+ + T   +++K+  R AGW G+ LS  GRV L K VL+SI +H M+
Sbjct: 272 LGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMS 331

Query: 513 IYKWPVSVIKECEGIIRNFIWSGSPSERKFITVK*QKVCRPEEEGGLGLCKLRDINLSML 692
               P S +   + + R+F+W  S ++RK   +  ++VC+P  EGGLG+ K +D+N ++L
Sbjct: 332 TIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALL 391

Query: 693 MKLAWSLLNN-TSDWSEFMNGKYR---NKSGGWSSHKK--STVWTGLQWALRE-MDTHQG 851
            K+ W L+ +  S W+  M   YR    + G W+  +   S+ W  +   +RE +     
Sbjct: 392 SKVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWTKVRSVCSSTWRSVALGMREVVIPGLS 451

Query: 852 WIIGKGENISLWRDNWIGDV 911
           W+IG G  I  W D W+ ++
Sbjct: 452 WVIGDGREILFWMDKWLTNI 471


>ref|XP_002453810.1| hypothetical protein SORBIDRAFT_04g018371 [Sorghum bicolor]
           gi|241933641|gb|EES06786.1| hypothetical protein
           SORBIDRAFT_04g018371 [Sorghum bicolor]
          Length = 498

 Score =  130 bits (326), Expect = 7e-28
 Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 4/195 (2%)
 Frame = +3

Query: 345 LGVPLTMGRVTRATLAPMVDKIRKRAAGWVGKMLSFKGRVVLAKQVLNSILIHNMAIYKW 524
           LGVPL   ++ R  L P++DKI KR AGW G++LS+ GR+VL K  L SI I+ +++ K+
Sbjct: 25  LGVPLHFTKLKREDLQPVIDKIIKRIAGWKGRLLSYAGRLVLLKSCLASIPIYLLSVIKF 84

Query: 525 PVSVIKECEGIIRNFIWSGSPSERKFITVK*QKVCRPEEEGGLGLCKLRDINLSMLMKLA 704
           P   I      + +FIW+ +  + K+     Q V + ++ GGLG+  LR +NL++L    
Sbjct: 85  PRWAIDMINSHMGHFIWNNTEKKHKYHLANWQLVSQEKDLGGLGIPDLRSLNLALLSSWI 144

Query: 705 WSL-LNNTSDWSEFMNGKYRNKSGG---WSSHKKSTVWTGLQWALREMDTHQGWIIGKGE 872
           +   LNN S W++ ++ KY+ K       S    S  W G+ WA++       W+IG G+
Sbjct: 145 FRYHLNNDSIWTKIVDFKYKTKKPNIFCCSKVGTSPFWKGVIWAMQAAHMGVRWVIGNGD 204

Query: 873 NISLWRDNWIGDVII 917
            I  W D W+G+  +
Sbjct: 205 KIRFWEDQWLGNTCL 219


>ref|XP_002439202.1| hypothetical protein SORBIDRAFT_09g002195 [Sorghum bicolor]
           gi|241944487|gb|EES17632.1| hypothetical protein
           SORBIDRAFT_09g002195 [Sorghum bicolor]
          Length = 521

 Score =  126 bits (316), Expect = 1e-26
 Identities = 65/192 (33%), Positives = 109/192 (56%), Gaps = 4/192 (2%)
 Frame = +3

Query: 345 LGVPLTMGRVTRATLAPMVDKIRKRAAGWVGKMLSFKGRVVLAKQVLNSILIHNMAIYKW 524
           LGVPL   ++ R  L P++DKI KR AGW G++LS+ GR+ L K  L SI I+ +++ K+
Sbjct: 39  LGVPLHFSKLRREDLQPVIDKIVKRIAGWKGRLLSYAGRLTLLKSCLASIPIYLLSVIKF 98

Query: 525 PVSVIKECEGIIRNFIWSGSPSERKFITVK*QKVCRPEEEGGLGLCKLRDINLSMLMKLA 704
           P   I      + +F+W+ +  + K+     Q V + +E GGLG+  LR +NL++L    
Sbjct: 99  PRWAIDLINTHMGHFLWNNTNEKHKYHLANWQLVSQKKEMGGLGIPDLRSLNLALLSSWI 158

Query: 705 WSL-LNNTSDWSEFMNGKYRNKSGG---WSSHKKSTVWTGLQWALREMDTHQGWIIGKGE 872
           +   LN+++ W++ ++ KY+ K       S+   S  W G+ WA++       W++G GE
Sbjct: 159 FRYHLNSSAIWTKIIDFKYKTKQPNIFCCSAVGASPFWKGVIWAMQAAHMGIKWVVGNGE 218

Query: 873 NISLWRDNWIGD 908
            +  W D W+G+
Sbjct: 219 KVRFWEDQWLGN 230


>ref|XP_003550922.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
           max]
          Length = 549

 Score =  121 bits (303), Expect = 3e-25
 Identities = 67/208 (32%), Positives = 107/208 (51%), Gaps = 10/208 (4%)
 Frame = +3

Query: 345 LGVPLTMGRVTRATLAPMVDKIRKRAAGWVGKMLSFKGRVVLAKQVLNSILIHNMAIYKW 524
           LG+P+           P+++K  ++ AGW  + LSF GRV+L   VL SI I+ ++ ++ 
Sbjct: 158 LGIPIGANPRRCQMWEPLINKCERKLAGWKQRHLSFGGRVILINSVLTSIPIYFLSFFRV 217

Query: 525 PVSVIKECEGIIRNFIWSGSPSERKFITVK*QKVCRPEEEGGLGLCKLRDINLSMLMKLA 704
           P  VI +   + RNF+W G+  + K   +K +KVC P+E+GGLG+  +   N S+L K  
Sbjct: 218 PRQVISKITRLQRNFLWGGAADQNKIPWIKWEKVCLPKEQGGLGVKDIISFNTSLLGKWK 277

Query: 705 WSLLNNTSD-WSEFMNGKY---RNKSGGWSSHKKSTVWTGLQWALREMDTHQG------W 854
           W +  N  + W+  +  KY   R+  G   +  +S+ W  L+   + M+  Q       W
Sbjct: 278 WEMFQNQEETWARVLESKYGGWRSLDGASRASTESSWWRDLKIVNQSMNQGQQLNRLILW 337

Query: 855 IIGKGENISLWRDNWIGDVIIDNFIQDK 938
            +G G+    W D WIG    DN + DK
Sbjct: 338 RVGCGDKFKFWEDRWIGG---DNCLADK 362