BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027232
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...   135   3e-30
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...   135   5e-30
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...   132   4e-29
ref|XP_002877605.1| pentatricopeptide repeat-containing protein ...   129   2e-28
ref|NP_190408.1| pentatricopeptide repeat-containing protein [Ar...   129   2e-28

>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score =  135 bits (340), Expect = 3e-30
 Identities = 64/108 (59%), Positives = 84/108 (77%), Gaps = 9/108 (8%)
 Frame = -2

Query: 349 KKYEATGYALSKAVYDGIHRCLTNAGRFNESEMILETMKTAGHEPDNSTYSQALNGLCTS 170
           KK+EATGY+LSKA+YDGIHR LT+ G+F+++E I+++M+ AG+EPDN TYSQ + GLC +
Sbjct: 354 KKFEATGYSLSKAMYDGIHRSLTSTGKFDDAENIVKSMRNAGYEPDNVTYSQLVFGLCKA 413

Query: 169 ERMEEAYKLLDE---------IKTWTILIQGHCKARDIDQAMKCFTKM 53
            R+EEA K+LDE         IKTWTILIQGHC A ++D A+ CF KM
Sbjct: 414 RRLEEARKVLDEMEAQGCIPDIKTWTILIQGHCNANELDIALVCFAKM 461


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score =  135 bits (339), Expect = 5e-30
 Identities = 64/108 (59%), Positives = 81/108 (75%), Gaps = 9/108 (8%)
 Frame = -2

Query: 349 KKYEATGYALSKAVYDGIHRCLTNAGRFNESEMILETMKTAGHEPDNSTYSQALNGLCTS 170
           KKYE+TG+ LSKA+YDGIHR LT+AG F+E+E I+ TM+ AG+EPDN TYSQ + GLC  
Sbjct: 360 KKYESTGHTLSKAIYDGIHRSLTSAGNFDEAENIVRTMRNAGYEPDNITYSQMVFGLCKM 419

Query: 169 ERMEEAYKLLD---------EIKTWTILIQGHCKARDIDQAMKCFTKM 53
            R EEA K+L+         +IKTWTILIQGHC A ++D+A+ CF KM
Sbjct: 420 RRFEEACKVLEDMESSRCIPDIKTWTILIQGHCSANEVDKALLCFAKM 467


>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  132 bits (331), Expect = 4e-29
 Identities = 64/108 (59%), Positives = 82/108 (75%), Gaps = 9/108 (8%)
 Frame = -2

Query: 349 KKYEATGYALSKAVYDGIHRCLTNAGRFNESEMILETMKTAGHEPDNSTYSQALNGLCTS 170
           +KYEA G +L KAVYDGIHR LT+ GRF+E+  I+E+M++AG EPDN TYSQ + GLC +
Sbjct: 361 EKYEAVGNSLCKAVYDGIHRSLTSVGRFDEAGKIMESMRSAGCEPDNITYSQLVYGLCKA 420

Query: 169 ERMEEAYKLLDE---------IKTWTILIQGHCKARDIDQAMKCFTKM 53
            ++EEA KLLDE         IKTWTILIQGHC A+++D+A+ CF KM
Sbjct: 421 RKLEEACKLLDEMEACGCVPDIKTWTILIQGHCAAKEVDKALICFAKM 468


>ref|XP_002877605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297323443|gb|EFH53864.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 618

 Score =  129 bits (325), Expect = 2e-28
 Identities = 62/108 (57%), Positives = 81/108 (75%), Gaps = 9/108 (8%)
 Frame = -2

Query: 349 KKYEATGYALSKAVYDGIHRCLTNAGRFNESEMILETMKTAGHEPDNSTYSQALNGLCTS 170
           +KYE+TG +LSKAVYDGIHR LT+ GRF+E+E I + M+ AG+EPDN TYSQ + GLC +
Sbjct: 356 RKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKA 415

Query: 169 ERMEEAYKLLD---------EIKTWTILIQGHCKARDIDQAMKCFTKM 53
           +R+EEA  +LD         +IKTWTILIQGHCK  ++D+A+ CF  M
Sbjct: 416 KRLEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDRALACFANM 463


>ref|NP_190408.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207690|sp|Q9STK5.1|PP269_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g48250, chloroplastic; Flags: Precursor
           gi|4678363|emb|CAB41173.1| putative protein [Arabidopsis
           thaliana] gi|332644870|gb|AEE78391.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  129 bits (325), Expect = 2e-28
 Identities = 62/108 (57%), Positives = 81/108 (75%), Gaps = 9/108 (8%)
 Frame = -2

Query: 349 KKYEATGYALSKAVYDGIHRCLTNAGRFNESEMILETMKTAGHEPDNSTYSQALNGLCTS 170
           +KYE+TG +LSKAVYDGIHR LT+ GRF+E+E I + M+ AG+EPDN TYSQ + GLC +
Sbjct: 359 RKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKA 418

Query: 169 ERMEEAYKLLD---------EIKTWTILIQGHCKARDIDQAMKCFTKM 53
           +R+EEA  +LD         +IKTWTILIQGHCK  ++D+A+ CF  M
Sbjct: 419 KRLEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANM 466