BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027123
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   127   7e-28
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...   120   1e-25
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   119   3e-25
gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japo...   115   4e-24
gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indi...   115   4e-24

>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  127 bits (320), Expect = 7e-28
 Identities = 61/110 (55%), Positives = 80/110 (72%)
 Frame = -2

Query: 331 IYHPSYVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPSNIPCSYCPDIPQILVNEFKTT 152
           IYHP +VSELKR+LS +CLKCL+++++K+  N G       PC  C D PQ+ V EF+ T
Sbjct: 80  IYHPGHVSELKRMLSLLCLKCLKIRKSKVTNN-GITEQLLAPC--CQDSPQVSVREFRPT 136

Query: 151 DGVVFLELKVVTRSIPHNGFWNFLDKYGYRYGEGKSRILLPCEVLEILNK 2
           +G  FLELK+ +RS P +GFW+FL +YGYRYG   SRILLP EV+EIL +
Sbjct: 137 EGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILLPSEVMEILRR 186


>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 924

 Score =  120 bits (300), Expect = 1e-25
 Identities = 58/110 (52%), Positives = 80/110 (72%)
 Frame = -2

Query: 331 IYHPSYVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPSNIPCSYCPDIPQILVNEFKTT 152
           IYHPS++SELKR+LS +CLKCL+LKR KI+  + S+  +    S C +  QI + E K T
Sbjct: 81  IYHPSHISELKRMLSLICLKCLKLKRNKIQ--IKSNGVAERLLSCCEECAQISIREVKNT 138

Query: 151 DGVVFLELKVVTRSIPHNGFWNFLDKYGYRYGEGKSRILLPCEVLEILNK 2
           DG  FLELK+ +RS   +G WNFL++YG+RYG+  +R LLPCEV++IL +
Sbjct: 139 DGACFLELKLPSRSRLRDGCWNFLERYGFRYGDDFTRPLLPCEVMQILKR 188


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score =  119 bits (297), Expect = 3e-25
 Identities = 58/110 (52%), Positives = 79/110 (71%)
 Frame = -2

Query: 331 IYHPSYVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPSNIPCSYCPDIPQILVNEFKTT 152
           IYHPS+VSELKR+LS +CLKCL+LK  KI+ +  ++R      S C +  QI + E KTT
Sbjct: 83  IYHPSHVSELKRMLSLLCLKCLKLKTNKIKSSGVAERLF----SCCEEAAQISIKEVKTT 138

Query: 151 DGVVFLELKVVTRSIPHNGFWNFLDKYGYRYGEGKSRILLPCEVLEILNK 2
           DG   L+LK+ +R    +GFWNFL++YG+RYG+  +R LLPCEVLE+L +
Sbjct: 139 DGAYILQLKLPSRMRLRDGFWNFLERYGFRYGDDITRTLLPCEVLEMLRR 188


>gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
          Length = 2017

 Score =  115 bits (288), Expect = 4e-24
 Identities = 55/111 (49%), Positives = 72/111 (64%), Gaps = 1/111 (0%)
 Frame = -2

Query: 331 IYHPSYVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPSNIPCSYCPDIPQILVNEFKTT 152
           IYHP +V+EL+++L+ VCLKCLR+K+ K++Q  G D  S + C YC D+P + + E KT 
Sbjct: 82  IYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTSALSCYYCRDLPALSLKEIKTA 141

Query: 151 DGVVFLELKVVTRSIPHNGFWNFLDKYGYRY-GEGKSRILLPCEVLEILNK 2
           DG   LELK+  R     G WNFLDKYG+ + G    R LLP E L IL K
Sbjct: 142 DGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRTLLPEEALNILKK 192


>gb|EEC72510.1| hypothetical protein OsI_05888 [Oryza sativa Indica Group]
          Length = 1867

 Score =  115 bits (288), Expect = 4e-24
 Identities = 55/111 (49%), Positives = 72/111 (64%), Gaps = 1/111 (0%)
 Frame = -2

Query: 331 IYHPSYVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPSNIPCSYCPDIPQILVNEFKTT 152
           IYHP +V+EL+++L+ VCLKCLR+K+ K++Q  G D  S + C YC D+P + + E KT 
Sbjct: 82  IYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTSALSCYYCRDLPALSLKEIKTA 141

Query: 151 DGVVFLELKVVTRSIPHNGFWNFLDKYGYRY-GEGKSRILLPCEVLEILNK 2
           DG   LELK+  R     G WNFLDKYG+ + G    R LLP E L IL K
Sbjct: 142 DGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRTLLPEEALNILKK 192