BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027105
         (609 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containi...   254   8e-66
ref|NP_178260.1| pentatricopeptide repeat-containing protein [Ar...   243   2e-62
ref|XP_002876755.1| pentatricopeptide repeat-containing protein ...   236   2e-60
ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containi...   202   5e-50
ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containi...   202   5e-50

>ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
           gi|297737690|emb|CBI26891.3| unnamed protein product
           [Vitis vinifera]
          Length = 610

 Score =  254 bits (649), Expect = 8e-66
 Identities = 127/202 (62%), Positives = 144/202 (71%)
 Frame = +2

Query: 2   IGGYAINGESEMALELFDKMHNEGVEPNHVTFLGVLSACSHAGLVNEGRGYFEYMVSAKN 181
           IGGYA+NGESE AL LF +M N+GV+PN+VTFL VLSACSH G VNEG  YF +M  + +
Sbjct: 309 IGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDD 368

Query: 182 GNIQPRIEHYACMVDLLGRYGLLEEAYNFIKSMPMEPDSGVWGALLGACTTHQNTELGQH 361
            NIQPR EHYACMVDLLGR G LEEAYNFIK MP+E D G+WGALLGAC  HQN +LGQH
Sbjct: 369 KNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQH 428

Query: 362 VADILSNLAPETGSYRVLLSNIYAASGLWGDXXXXXXXXXXXXXXXXXGYSSVESNGEIC 541
           VAD+L  LAPE  SY VLLSN+YAA+G W                    YSSVE NGEI 
Sbjct: 429 VADLLFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIH 488

Query: 542 VFYGGDRSHPLSTRIYDLLEEL 607
           + YGGD+SHP S  I   LE+L
Sbjct: 489 ILYGGDKSHPQSASILAKLEDL 510


>ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
           gi|3785980|gb|AAC67327.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250369|gb|AEC05463.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 584

 Score =  243 bits (620), Expect = 2e-62
 Identities = 121/202 (59%), Positives = 143/202 (70%)
 Frame = +2

Query: 2   IGGYAINGESEMALELFDKMHNEGVEPNHVTFLGVLSACSHAGLVNEGRGYFEYMVSAKN 181
           I GYA+NG+S  AL LF  M NEG+ PN+VTFLGVLSACSHAGLVNEG+ YF  MV + +
Sbjct: 283 IVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSND 342

Query: 182 GNIQPRIEHYACMVDLLGRYGLLEEAYNFIKSMPMEPDSGVWGALLGACTTHQNTELGQH 361
            N++PR EHYACMVDLLGR GLLEEAY FIK MP+EPD+G+WGALLGAC  H++  LGQ 
Sbjct: 343 KNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQK 402

Query: 362 VADILSNLAPETGSYRVLLSNIYAASGLWGDXXXXXXXXXXXXXXXXXGYSSVESNGEIC 541
           VAD+L   AP+ GSY VLLSNIYAA+G W                    YSSVE  G+I 
Sbjct: 403 VADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIH 462

Query: 542 VFYGGDRSHPLSTRIYDLLEEL 607
            F  GD+SHP S  IY+ L+E+
Sbjct: 463 FFNRGDKSHPQSKAIYEKLDEI 484


>ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322593|gb|EFH53014.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 597

 Score =  236 bits (602), Expect = 2e-60
 Identities = 120/202 (59%), Positives = 141/202 (69%)
 Frame = +2

Query: 2   IGGYAINGESEMALELFDKMHNEGVEPNHVTFLGVLSACSHAGLVNEGRGYFEYMVSAKN 181
           I GYA+NG+S  AL LF  M NEG+ PN+VTFLGVLSACSHAGLVNEG+ YF  MV   +
Sbjct: 283 IVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLND 342

Query: 182 GNIQPRIEHYACMVDLLGRYGLLEEAYNFIKSMPMEPDSGVWGALLGACTTHQNTELGQH 361
            N++PR EHYACMVDLLGR GLLEEAY FIK M +EPD+G+WGALLGAC  H++  LGQ 
Sbjct: 343 KNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQK 402

Query: 362 VADILSNLAPETGSYRVLLSNIYAASGLWGDXXXXXXXXXXXXXXXXXGYSSVESNGEIC 541
           VAD+L   AP+ GSY VLLSNIYAA+G W                    YSSVE +G+I 
Sbjct: 403 VADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDGKIH 462

Query: 542 VFYGGDRSHPLSTRIYDLLEEL 607
            F  GD SHP S  IY+ L+E+
Sbjct: 463 FFNRGDISHPQSKAIYEKLDEI 484


>ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  202 bits (513), Expect = 5e-50
 Identities = 101/202 (50%), Positives = 133/202 (65%)
 Frame = +2

Query: 2   IGGYAINGESEMALELFDKMHNEGVEPNHVTFLGVLSACSHAGLVNEGRGYFEYMVSAKN 181
           + GYA +G    A++LF+ M N+G+EP+HVTF  +LSACSH+GLVNEG+ YF  M     
Sbjct: 311 LAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYG 370

Query: 182 GNIQPRIEHYACMVDLLGRYGLLEEAYNFIKSMPMEPDSGVWGALLGACTTHQNTELGQH 361
             I+PR++HY+CMVDLLGR GLL +AY  I++MPMEP++GVWGALLGAC  H N ELG+ 
Sbjct: 371 --IEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKE 428

Query: 362 VADILSNLAPETGSYRVLLSNIYAASGLWGDXXXXXXXXXXXXXXXXXGYSSVESNGEIC 541
           VA+ L N+ P      ++LSN+Y+AS  W D                 GYSS+E   +  
Sbjct: 429 VAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNH 488

Query: 542 VFYGGDRSHPLSTRIYDLLEEL 607
            F+ GDRSHP + +IY  LEEL
Sbjct: 489 HFFVGDRSHPETEKIYSKLEEL 510


>ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  202 bits (513), Expect = 5e-50
 Identities = 101/202 (50%), Positives = 133/202 (65%)
 Frame = +2

Query: 2   IGGYAINGESEMALELFDKMHNEGVEPNHVTFLGVLSACSHAGLVNEGRGYFEYMVSAKN 181
           + GYA +G    A++LF+ M N+G+EP+HVTF  +LSACSH+GLVNEG+ YF  M     
Sbjct: 311 LAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYG 370

Query: 182 GNIQPRIEHYACMVDLLGRYGLLEEAYNFIKSMPMEPDSGVWGALLGACTTHQNTELGQH 361
             I+PR++HY+CMVDLLGR GLL +AY  I++MPMEP++GVWGALLGAC  H N ELG+ 
Sbjct: 371 --IEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKE 428

Query: 362 VADILSNLAPETGSYRVLLSNIYAASGLWGDXXXXXXXXXXXXXXXXXGYSSVESNGEIC 541
           VA+ L N+ P      ++LSN+Y+AS  W D                 GYSS+E   +  
Sbjct: 429 VAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNH 488

Query: 542 VFYGGDRSHPLSTRIYDLLEEL 607
            F+ GDRSHP + +IY  LEEL
Sbjct: 489 HFFVGDRSHPETEKIYSKLEEL 510