BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027103
         (552 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containi...   236   2e-60
ref|XP_002513633.1| pentatricopeptide repeat-containing protein,...   212   4e-53
ref|XP_002305943.1| predicted protein [Populus trichocarpa] gi|2...   202   3e-50
ref|XP_003592182.1| Pentatricopeptide repeat-containing protein ...   201   5e-50
ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containi...   200   1e-49

>ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
            chloroplastic [Vitis vinifera]
            gi|302143764|emb|CBI22625.3| unnamed protein product
            [Vitis vinifera]
          Length = 880

 Score =  236 bits (601), Expect = 2e-60
 Identities = 120/182 (65%), Positives = 131/182 (71%)
 Frame = -3

Query: 547  MQDDDVKMDEFIXXXXXXXXXXXXAMEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGS 368
            M  DDV+MD F              ME GKQLHCYSVKSGL SWISVSNGLVDLYGKCG 
Sbjct: 511  MNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGC 570

Query: 367  MHDARRVFMEIDKPNVVSWNGLIXXXXXXXXXXXXXXXFEDMRLAGIHPDEITFLLVLYT 188
            +HDA R F+EI +P+ VSWNGLI               FEDMRLAG+ PD+IT LLVLY 
Sbjct: 571  IHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYA 630

Query: 187  CSHGGLVDRGLEYFHSMSETYRIVPQPDHYVCLVDLLGRAGRLEEAMDVLEKMPFKADAL 8
            CSHGGLVD GL+YF SM E + I PQ DHYVCLVDLLGRAGRLEEAM+V+E MPFK DAL
Sbjct: 631  CSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDAL 690

Query: 7    IY 2
            IY
Sbjct: 691  IY 692



 Score = 62.0 bits (149), Expect = 6e-08
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
 Frame = -3

Query: 472 MEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGSM-HDARRVFMEIDKPNVVSWNGLIX 296
           ++ GKQ+H   V +GL + +SV N LVD+Y KC +M  DA R F  I  PNV+SW  LI 
Sbjct: 333 LDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIA 392

Query: 295 XXXXXXXXXXXXXXFEDMRLAGIHPDEITFLLVLYTC 185
                         F  M+  G+ P+  T   +L  C
Sbjct: 393 GFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGAC 429


>ref|XP_002513633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223547541|gb|EEF49036.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 777

 Score =  212 bits (539), Expect = 4e-53
 Identities = 107/182 (58%), Positives = 127/182 (69%)
 Frame = -3

Query: 547  MQDDDVKMDEFIXXXXXXXXXXXXAMEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGS 368
            M + DVK+D F              +E GKQLHCYS+KSGL   +SV+NGL+DLYGK G 
Sbjct: 515  MFNADVKIDGFSLTCFFSASASLGRIETGKQLHCYSLKSGLSCCLSVANGLIDLYGKYGL 574

Query: 367  MHDARRVFMEIDKPNVVSWNGLIXXXXXXXXXXXXXXXFEDMRLAGIHPDEITFLLVLYT 188
            +H+ARR F EI +P+VVSWNGLI               F+DMRL GI PD ITFLLVL T
Sbjct: 575  VHEARRAFTEITEPDVVSWNGLISGLASNGHISSALSAFDDMRLRGIQPDSITFLLVLST 634

Query: 187  CSHGGLVDRGLEYFHSMSETYRIVPQPDHYVCLVDLLGRAGRLEEAMDVLEKMPFKADAL 8
            CSHGGLVD GL+YFHSM E + + PQ DHYVCLVD+LGRAGRLEEAM+++E MP + DA 
Sbjct: 635  CSHGGLVDMGLQYFHSMREMHDVEPQSDHYVCLVDILGRAGRLEEAMNIIETMPLEPDAS 694

Query: 7    IY 2
            IY
Sbjct: 695  IY 696



 Score = 64.7 bits (156), Expect = 9e-09
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
 Frame = -3

Query: 472 MEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGS-MHDARRVFMEIDKPNVVSWNGLIX 296
           ++ G+Q+H   +++GL   + V N LVD+Y KC   +    R+F  I  PNV+SW  LI 
Sbjct: 337 LDLGRQIHSRVIRTGLEDDVPVGNALVDMYMKCSCIVEHGLRMFRGIKSPNVISWTSLIA 396

Query: 295 XXXXXXXXXXXXXXFEDMRLAGIHPDEITFLLVLYTCS-----------HGGLVDRGLEY 149
                         F +MR  G+ P+  T  +VL  CS           HG ++    +Y
Sbjct: 397 GFAEHGFQQDSLNLFMEMRTVGVQPNSFTLSIVLRVCSAIKSPYQTLKLHGHIIKTKADY 456

Query: 148 FHSMSETYRIVPQPDHYVCLVDLLGRAGRLEEAMDVLEKMPFKADALIY 2
              +               LVD    +GR+++A  V++ M  + D++ Y
Sbjct: 457 DVVVGN------------ALVDAYAGSGRVDDAWRVVKDMN-QRDSITY 492



 Score = 55.5 bits (132), Expect = 6e-06
 Identities = 41/148 (27%), Positives = 67/148 (45%)
 Frame = -3

Query: 472 MEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGSMHDARRVFMEIDKPNVVSWNGLIXX 293
           ++ G  +H   +K GL   + ++N L+ LY KC S+  AR+ F E+   +VVSW G++  
Sbjct: 35  LKEGVCIHSPIIKLGLQDHLYLNNNLLSLYSKCFSVEHARQFFDEMPCRDVVSWTGILSA 94

Query: 292 XXXXXXXXXXXXXFEDMRLAGIHPDEITFLLVLYTCSHGGLVDRGLEYFHSMSETYRIVP 113
                        F+ M L+G +P+  TF  +L +C   G    G +  H+ S  +    
Sbjct: 95  HIKNERHEEALDIFDFMVLSGPYPNAFTFSSILRSCFALGDFSYG-KRIHASSIKHGFES 153

Query: 112 QPDHYVCLVDLLGRAGRLEEAMDVLEKM 29
                  L+DL  R    E+A  +   M
Sbjct: 154 NQILGSSLIDLYSRFDSTEDACKLFSYM 181


>ref|XP_002305943.1| predicted protein [Populus trichocarpa] gi|222848907|gb|EEE86454.1|
           predicted protein [Populus trichocarpa]
          Length = 693

 Score =  202 bits (514), Expect = 3e-50
 Identities = 104/182 (57%), Positives = 123/182 (67%)
 Frame = -3

Query: 547 MQDDDVKMDEFIXXXXXXXXXXXXAMEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGS 368
           M +DD+KMD +             ++E G QLH YSVKSGL S ISVSNGLV  YGKCG 
Sbjct: 436 MFNDDIKMDGYSMAGFLSASAGLNSVETGMQLHSYSVKSGLGSSISVSNGLVSFYGKCGL 495

Query: 367 MHDARRVFMEIDKPNVVSWNGLIXXXXXXXXXXXXXXXFEDMRLAGIHPDEITFLLVLYT 188
             DA R F EI +P++VSWNGLI               F+DMRL G+ PD +TFLLVL+T
Sbjct: 496 TRDAERAFAEIREPDIVSWNGLISVLASYGHISSALSAFDDMRLTGVKPDSVTFLLVLFT 555

Query: 187 CSHGGLVDRGLEYFHSMSETYRIVPQPDHYVCLVDLLGRAGRLEEAMDVLEKMPFKADAL 8
           C+H GLVD GLEYF+SM E + I PQ DHYVCL DLLGRAGRLEEAM++LE MP + +A 
Sbjct: 556 CTHCGLVDMGLEYFNSMKEMHGIEPQLDHYVCLFDLLGRAGRLEEAMEILETMPIRPNAS 615

Query: 7   IY 2
           IY
Sbjct: 616 IY 617



 Score = 65.5 bits (158), Expect = 5e-09
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 5/162 (3%)
 Frame = -3

Query: 472 MEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCG-SMHDARRVFMEIDKPNVVSWNGLIX 296
           ++ G+Q+H   + +GL   I V N LVD+Y KC   + D  RVF  I+ P+V+SW  LI 
Sbjct: 258 LDLGRQIHARVIMAGLEDDIPVGNALVDMYMKCSHEVEDGLRVFEGIESPDVISWTSLIA 317

Query: 295 XXXXXXXXXXXXXXFEDMRLAGIHPDEITFLLVLYTCSHGGLVDRGLEYFHSMSETYRIV 116
                         + +M  +G+ P+ +T  ++L +C       + L+    + +T    
Sbjct: 318 GLSEHGFHQGSFDSYMEMTASGLQPNSVTLSIILRSCRAAKSASQLLKLHGHVIKT---- 373

Query: 115 PQPDHYV----CLVDLLGRAGRLEEAMDVLEKMPFKADALIY 2
              DH +     LVD      R+++A  ++  M  + DAL Y
Sbjct: 374 -NADHDIAVSNALVDAYAGNERVDDAWHLIRNMS-QRDALTY 413



 Score = 55.5 bits (132), Expect = 6e-06
 Identities = 39/146 (26%), Positives = 69/146 (47%)
 Frame = -3

Query: 463 GKQLHCYSVKSGLFSWISVSNGLVDLYGKCGSMHDARRVFMEIDKPNVVSWNGLIXXXXX 284
           GK +H   +K G  S   + + L+DLY K GS+ +A R+F  ++  +VVSW  +I     
Sbjct: 60  GKCIHGCVIKHGFESNQILGSVLIDLYSKYGSIEEACRLFSCVENGDVVSWTTMISSLVQ 119

Query: 283 XXXXXXXXXXFEDMRLAGIHPDEITFLLVLYTCSHGGLVDRGLEYFHSMSETYRIVPQPD 104
                     + DM  AG++P+E TF+ VL      GL    + + H +   + +     
Sbjct: 120 AGKWSQALRIYIDMIKAGVYPNEFTFVKVLAAAGFLGLKHGKVVHAHLI--VFGVELNLV 177

Query: 103 HYVCLVDLLGRAGRLEEAMDVLEKMP 26
               LV +  +  R+++A+ + +  P
Sbjct: 178 VKTALVHMYSKCQRMDDAVRISKLTP 203


>ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355481230|gb|AES62433.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 912

 Score =  201 bits (512), Expect = 5e-50
 Identities = 102/181 (56%), Positives = 119/181 (65%)
 Frame = -3

Query: 547  MQDDDVKMDEFIXXXXXXXXXXXXAMEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGS 368
            M +D +KMDEF              ME GKQLHCYSVKSG     SVSN LV LY KCGS
Sbjct: 512  MCNDGIKMDEFSLASFLSAAAGLGTMETGKQLHCYSVKSGFQRCHSVSNSLVHLYSKCGS 571

Query: 367  MHDARRVFMEIDKPNVVSWNGLIXXXXXXXXXXXXXXXFEDMRLAGIHPDEITFLLVLYT 188
            +HDA R F +I +P+  SWNGLI               F+DMRLAG+ PD IT L ++  
Sbjct: 572  IHDANRAFKDISEPDAFSWNGLISGFSWNGLISHALSTFDDMRLAGVKPDSITLLSLISA 631

Query: 187  CSHGGLVDRGLEYFHSMSETYRIVPQPDHYVCLVDLLGRAGRLEEAMDVLEKMPFKADAL 8
            CSHGGL++ GLEYFHSM + Y I P+ DHY+CLVDLLGR GRLEEAM V+EKM FK D+L
Sbjct: 632  CSHGGLLELGLEYFHSMQKEYHITPKLDHYMCLVDLLGRGGRLEEAMGVIEKMSFKPDSL 691

Query: 7    I 5
            I
Sbjct: 692  I 692



 Score = 55.5 bits (132), Expect = 6e-06
 Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 2/159 (1%)
 Frame = -3

Query: 472 MEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGSM-HDARRVFMEIDKPNVVSWNGLIX 296
           ++ G+Q H   +  GL   + + N LVD+Y KC  +  +A +VF EI  PNV+ W  LI 
Sbjct: 335 LDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVMCWTSLIA 394

Query: 295 XXXXXXXXXXXXXXFEDMRLAGIHPDEITFLLVLYTCSH-GGLVDRGLEYFHSMSETYRI 119
                          E M+ AG+ P+  T   +L  CS    LV   + + H +     I
Sbjct: 395 GFAEKRLEDSFQLFAE-MQAAGVRPNSFTMSAILGACSKTRSLVPTMMLHGHIIKTKVDI 453

Query: 118 VPQPDHYVCLVDLLGRAGRLEEAMDVLEKMPFKADALIY 2
                +   LVD     G ++EA  V+  M  + D++ Y
Sbjct: 454 DIAVAN--ALVDTYAGVGMIDEAWSVIGTMNLR-DSITY 489


>ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
            chloroplastic-like [Glycine max]
          Length = 903

 Score =  200 bits (508), Expect = 1e-49
 Identities = 101/182 (55%), Positives = 122/182 (67%)
 Frame = -3

Query: 547  MQDDDVKMDEFIXXXXXXXXXXXXAMEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCGS 368
            M +D+VKMDEF              ME GKQLHCYS KSG     SVSN LV  Y KCGS
Sbjct: 514  MCNDEVKMDEFSLASFISAAAGLGIMETGKQLHCYSFKSGFERCNSVSNSLVHSYSKCGS 573

Query: 367  MHDARRVFMEIDKPNVVSWNGLIXXXXXXXXXXXXXXXFEDMRLAGIHPDEITFLLVLYT 188
            M DA RVF +I +P+ VSWNGLI               F+DMRLAG+ PD +TFL +++ 
Sbjct: 574  MRDAYRVFKDITEPDRVSWNGLISGLASNGLISDALSAFDDMRLAGVKPDSVTFLSLIFA 633

Query: 187  CSHGGLVDRGLEYFHSMSETYRIVPQPDHYVCLVDLLGRAGRLEEAMDVLEKMPFKADAL 8
            CS G L+++GL+YF+SM +TY I P+ DHYVCLVDLLGR GRLEEAM V+E MPFK D++
Sbjct: 634  CSQGSLLNQGLDYFYSMEKTYHITPKLDHYVCLVDLLGRGGRLEEAMGVIETMPFKPDSV 693

Query: 7    IY 2
            IY
Sbjct: 694  IY 695



 Score = 54.7 bits (130), Expect = 1e-05
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
 Frame = -3

Query: 472 MEPGKQLHCYSVKSGLFSWISVSNGLVDLYGKCG-SMHDARRVFMEIDKPNVVSWNGLIX 296
           +E G+Q H   +  GL   I V N LVD+Y KC  +  +  + F  I  PNV+SW  LI 
Sbjct: 336 LELGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIA 395

Query: 295 XXXXXXXXXXXXXXFEDMRLAGIHPDEITFLLVLYTCS 182
                         F +M+ AG+ P+  T   +L  CS
Sbjct: 396 GFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGACS 433