BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00027093
         (502 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containi...   223   4e-60
ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containi...   201   6e-53
ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containi...   189   6e-49
emb|CAA16708.1| putatative protein [Arabidopsis thaliana] gi|726...   181   3e-48
ref|NP_001119013.1| pentatricopeptide repeat-containing protein ...   181   3e-48

>ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
           gi|296082485|emb|CBI21490.3| unnamed protein product
           [Vitis vinifera]
          Length = 637

 Score =  223 bits (569), Expect(2) = 4e-60
 Identities = 104/151 (68%), Positives = 121/151 (80%)
 Frame = -3

Query: 458 LEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIKDMPMEPDAGVWGALL 279
           LEKG ECF LMT+VYKI+P L+HY+CMADL GRKG+LKEAF+FI++MP +PD G+W  LL
Sbjct: 476 LEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLL 535

Query: 278 GACKIHNAIEIAECVADHLLRLEPKTAVSYVTMANIYAAEGEWKDVAKVRAMMKGNKVRK 99
            ACKIH  + I ECVA HL  LEP+TAV YV MANIYA+ G+W  VA +R MMK NK  K
Sbjct: 536 SACKIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMMKCNKAMK 595

Query: 98  SPGQSLVQANGKIHSFTVEDRSHPEGLLIYD 6
           SPG+SLVQ NGK H FTVEDR HPEGLLIY+
Sbjct: 596 SPGKSLVQVNGKTHEFTVEDRCHPEGLLIYE 626



 Score = 33.1 bits (74), Expect(2) = 4e-60
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -1

Query: 502 VTFLAVLQACIHGVSLRKGW 443
           +TFLAVLQAC H   L KGW
Sbjct: 461 ITFLAVLQACNHAGFLEKGW 480


>ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
           gi|449516723|ref|XP_004165396.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  201 bits (510), Expect(2) = 6e-53
 Identities = 94/151 (62%), Positives = 118/151 (78%)
 Frame = -3

Query: 458 LEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIKDMPMEPDAGVWGALL 279
           LEKG ECF +MTE Y I+P L+HY+CM DL GRKGKL EA + I+DMPM+PD G+WGALL
Sbjct: 474 LEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALL 533

Query: 278 GACKIHNAIEIAECVADHLLRLEPKTAVSYVTMANIYAAEGEWKDVAKVRAMMKGNKVRK 99
           GACKIHN +EI E V+ +L  L+P+ AVS+V MANIYA+ G W +VA +R  M+ N++RK
Sbjct: 534 GACKIHNNMEIGEYVSRYLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMRSNQMRK 593

Query: 98  SPGQSLVQANGKIHSFTVEDRSHPEGLLIYD 6
           SPG+S+VQ NG  H F VEDRSH + LLIY+
Sbjct: 594 SPGKSVVQVNGMSHVFFVEDRSHHDSLLIYE 624



 Score = 32.0 bits (71), Expect(2) = 6e-53
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -1

Query: 502 VTFLAVLQACIHGVSLRKG 446
           +TFLAVLQAC HG  L KG
Sbjct: 459 ITFLAVLQACCHGGYLEKG 477


>ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  189 bits (481), Expect(2) = 6e-49
 Identities = 87/153 (56%), Positives = 114/153 (74%)
 Frame = -3

Query: 461 ILEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIKDMPMEPDAGVWGAL 282
           ++E+GLECF +MT+ Y I+P ++HY+CM DL GRKG L+EA + IK MP EPD+G+W AL
Sbjct: 474 LVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSAL 533

Query: 281 LGACKIHNAIEIAECVADHLLRLEPKTAVSYVTMANIYAAEGEWKDVAKVRAMMKGNKVR 102
           L ACK+H  +E+ + V++ L  LEP+ AV YV MANIYA+   W+ VA +R  MK  +VR
Sbjct: 534 LSACKLHGKMEMGKYVSEQLFELEPQVAVPYVEMANIYASAEMWEGVAAIRRNMKYLQVR 593

Query: 101 KSPGQSLVQANGKIHSFTVEDRSHPEGLLIYDV 3
           KSPGQS++Q NGK   FTVEDR HPE L IYD+
Sbjct: 594 KSPGQSIIQVNGKPTIFTVEDRDHPETLYIYDM 626



 Score = 29.6 bits (65), Expect(2) = 6e-49
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -1

Query: 502 VTFLAVLQACIHGVSLRKG 446
           +TFLAVLQAC HG  + +G
Sbjct: 460 ITFLAVLQACAHGGLVERG 478


>emb|CAA16708.1| putatative protein [Arabidopsis thaliana] gi|7268714|emb|CAB78921.1|
            putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  181 bits (458), Expect(2) = 3e-48
 Identities = 84/150 (56%), Positives = 109/150 (72%)
 Frame = -3

Query: 458  LEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIKDMPMEPDAGVWGALL 279
            LEKG E F +M +VY ISP L+HY+CM DL GRKGKL+EA + I++M  +PDAG+WGALL
Sbjct: 1081 LEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALL 1140

Query: 278  GACKIHNAIEIAECVADHLLRLEPKTAVSYVTMANIYAAEGEWKDVAKVRAMMKGNKVRK 99
             ACKIH  ++IAE  A+ L  LEP+ A  YV MANIYAA G W   A++R++MK   ++K
Sbjct: 1141 NACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKK 1200

Query: 98   SPGQSLVQANGKIHSFTVEDRSHPEGLLIY 9
             PG+S++Q NGK HSFTV +  H E  +IY
Sbjct: 1201 YPGESVIQVNGKNHSFTVGEHGHVENEVIY 1230



 Score = 36.2 bits (82), Expect(2) = 3e-48
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = -1

Query: 502  VTFLAVLQACIHGVSLRKGW 443
            +TFLAVLQAC H  SL KGW
Sbjct: 1066 ITFLAVLQACAHSGSLEKGW 1085


>ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
           gi|332658758|gb|AEE84158.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  181 bits (458), Expect(2) = 3e-48
 Identities = 84/150 (56%), Positives = 109/150 (72%)
 Frame = -3

Query: 458 LEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIKDMPMEPDAGVWGALL 279
           LEKG E F +M +VY ISP L+HY+CM DL GRKGKL+EA + I++M  +PDAG+WGALL
Sbjct: 475 LEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALL 534

Query: 278 GACKIHNAIEIAECVADHLLRLEPKTAVSYVTMANIYAAEGEWKDVAKVRAMMKGNKVRK 99
            ACKIH  ++IAE  A+ L  LEP+ A  YV MANIYAA G W   A++R++MK   ++K
Sbjct: 535 NACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKK 594

Query: 98  SPGQSLVQANGKIHSFTVEDRSHPEGLLIY 9
            PG+S++Q NGK HSFTV +  H E  +IY
Sbjct: 595 YPGESVIQVNGKNHSFTVGEHGHVENEVIY 624



 Score = 36.2 bits (82), Expect(2) = 3e-48
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = -1

Query: 502 VTFLAVLQACIHGVSLRKGW 443
           +TFLAVLQAC H  SL KGW
Sbjct: 460 ITFLAVLQACAHSGSLEKGW 479