BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026971
         (1851 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containi...   386   e-104
emb|CBI17575.3| unnamed protein product [Vitis vinifera]              377   e-102
ref|XP_003631109.1| Pentatricopeptide repeat-containing protein ...   341   3e-91
ref|XP_002525094.1| pentatricopeptide repeat-containing protein,...   335   2e-89
ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containi...   328   2e-87

>ref|XP_002269078.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like
            [Vitis vinifera]
          Length = 519

 Score =  386 bits (991), Expect = e-104
 Identities = 194/373 (52%), Positives = 265/373 (71%), Gaps = 6/373 (1%)
 Frame = -3

Query: 1849 FDNNRTKDATEVYKEMLESGCSPNCYTYTVLMEYLISTGRFKEALEIMSKMQEAGVQPDK 1670
            FDN R K+A +VYKEML+SGC+PNCYTYTVLME+L  +G++K ALEI S+MQEAGVQPDK
Sbjct: 147  FDNKRVKEAADVYKEMLQSGCAPNCYTYTVLMEHLTGSGKYKAALEIFSRMQEAGVQPDK 206

Query: 1669 ATCNILVQKFSRAGEIWAVNHILKYMKEHKLVLRHPVYVQALQALKVAGESNELLKEANR 1490
            ATCNIL++KF + G+ WA+  IL YMK++ LVLR+PVY++ALQ LKVAGES+ LL++ N 
Sbjct: 207  ATCNILIEKFCKTGQTWAITQILLYMKDNFLVLRYPVYLEALQTLKVAGESDILLRQVNP 266

Query: 1489 HLSL------EGTDVEEVTADFHSTVDTAIIKNLLAKRNFIAVEHIIDGMISTNIQVSSK 1328
            HL++      E  + +E  AD HST+D   +   L K+NF A++ ++ GMI  N ++ S 
Sbjct: 267  HLNVGLSSKEEIVEFKETVADVHSTIDRGFVLLFLTKQNFYAIDCLLTGMIHKNTRLDSV 326

Query: 1327 LISAIIQSSCVNNRPTCAVSAYNYGIKMGICIERQACLSLIGFMIRSNLFSELVEIVENM 1148
            +IS II+ +C + R   A+ A+ Y +KMGI IER A L+L+G  IR+N F ++ +IVE M
Sbjct: 327  IISQIIEVNCAHCRINGALLAFEYSVKMGINIERIAYLALMGVFIRANSFPKVADIVEKM 386

Query: 1147 VGSGVSLGTYLLSLVIYKLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDK 968
            V +G+SLG YL +L+IY+LG  + P S  ++F  LPDDQK T  YTAL+ AYF S  VDK
Sbjct: 387  VRAGISLGMYLGALLIYRLGCARRPGSAAKVFGLLPDDQKGTAAYTALISAYFSSGNVDK 446

Query: 967  GLDIFHTMRRNGVPASPSTYRLLIVGLKKAGRVYEAEKYIKEERSVQRGCFPQEAVSMEE 788
            GL I+ TM+R  +  +  TY LL+ GL+K GR  EAE Y KE++++      Q+ VSM+E
Sbjct: 447  GLKIYKTMQRKRIHPALGTYNLLLAGLEKKGRAREAEIYRKEKKTLHTHGHSQDIVSMDE 506

Query: 787  HLCELLFSGGVAS 749
             +C LLFSG + S
Sbjct: 507  KICNLLFSGNLVS 519


>emb|CBI17575.3| unnamed protein product [Vitis vinifera]
          Length = 656

 Score =  377 bits (969), Expect = e-102
 Identities = 194/384 (50%), Positives = 265/384 (69%), Gaps = 17/384 (4%)
 Frame = -3

Query: 1849 FDNNRTKDATEVYKEMLESGCSPNCYTYTVLMEYLISTGR-----------FKEALEIMS 1703
            FDN R K+A +VYKEML+SGC+PNCYTYTVLME+L  +G+           +K ALEI S
Sbjct: 273  FDNKRVKEAADVYKEMLQSGCAPNCYTYTVLMEHLTGSGKHLLQFSCIACKYKAALEIFS 332

Query: 1702 KMQEAGVQPDKATCNILVQKFSRAGEIWAVNHILKYMKEHKLVLRHPVYVQALQALKVAG 1523
            +MQEAGVQPDKATCNIL++KF + G+ WA+  IL YMK++ LVLR+PVY++ALQ LKVAG
Sbjct: 333  RMQEAGVQPDKATCNILIEKFCKTGQTWAITQILLYMKDNFLVLRYPVYLEALQTLKVAG 392

Query: 1522 ESNELLKEANRHLSL------EGTDVEEVTADFHSTVDTAIIKNLLAKRNFIAVEHIIDG 1361
            ES+ LL++ N HL++      E  + +E  AD HST+D   +   L K+NF A++ ++ G
Sbjct: 393  ESDILLRQVNPHLNVGLSSKEEIVEFKETVADVHSTIDRGFVLLFLTKQNFYAIDCLLTG 452

Query: 1360 MISTNIQVSSKLISAIIQSSCVNNRPTCAVSAYNYGIKMGICIERQACLSLIGFMIRSNL 1181
            MI  N ++ S +IS II+ +C + R   A+ A+ Y +KMGI IER A L+L+G  IR+N 
Sbjct: 453  MIHKNTRLDSVIISQIIEVNCAHCRINGALLAFEYSVKMGINIERIAYLALMGVFIRANS 512

Query: 1180 FSELVEIVENMVGSGVSLGTYLLSLVIYKLGSTQMPASCLRIFCSLPDDQKNTVTYTALM 1001
            F ++ +IVE MV +G+SLG YL +L+IY+LG  + P S  ++F  LPDDQK T  YTAL+
Sbjct: 513  FPKVADIVEKMVRAGISLGMYLGALLIYRLGCARRPGSAAKVFGLLPDDQKGTAAYTALI 572

Query: 1000 GAYFCSREVDKGLDIFHTMRRNGVPASPSTYRLLIVGLKKAGRVYEAEKYIKEERSVQRG 821
             AYF S  VDKGL I+ TM+R  +  +  TY LL+ GL+K GR  EAE Y KE++++   
Sbjct: 573  SAYFSSGNVDKGLKIYKTMQRKRIHPALGTYNLLLAGLEKKGRAREAEIYRKEKKTLHTH 632

Query: 820  CFPQEAVSMEEHLCELLFSGGVAS 749
               Q+ VSM+E +C LLFSG + S
Sbjct: 633  GHSQDIVSMDEKICNLLFSGNLVS 656


>ref|XP_003631109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355525131|gb|AET05585.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 687

 Score =  341 bits (875), Expect = 3e-91
 Identities = 178/371 (47%), Positives = 251/371 (67%), Gaps = 6/371 (1%)
 Frame = -3

Query: 1849 FDNNRTKDATEVYKEMLESGCSPNCYTYTVLMEYLISTGRFKEALEIMSKMQEAGVQPDK 1670
            FDN+R K+AT +YKEML +GC PNCYTYTVLM++LI++G+ KEALEI  KMQEAGV+PDK
Sbjct: 315  FDNHRVKEATAIYKEMLHNGCVPNCYTYTVLMDHLIASGKCKEALEIFQKMQEAGVEPDK 374

Query: 1669 ATCNILVQKFSRAGEIWAVNHILKYMKEHKLVLRHPVYVQALQALKVAGESNELLKEANR 1490
            A CNIL+ K S+      +  IL+YMKE++LVLR+ VYV+A++ALK+AGES+ LL++ N 
Sbjct: 375  AACNILIDKCSKVCGTVFMTKILQYMKENRLVLRYRVYVKAMEALKIAGESDTLLRQVNP 434

Query: 1489 HLSLEGT------DVEEVTADFHSTVDTAIIKNLLAKRNFIAVEHIIDGMISTNIQVSSK 1328
            H  L+ +      D   V AD  S +D  ++  LL  RN +A++H+I GM+   I V +K
Sbjct: 435  HFYLDSSFKEKAHDRNTVIADSSSNIDKELLLVLLRNRNVVAIDHLIQGMMDKKISVDNK 494

Query: 1327 LISAIIQSSCVNNRPTCAVSAYNYGIKMGICIERQACLSLIGFMIRSNLFSELVEIVENM 1148
            +IS II+ +C   RP  A+ A+NY + MGI IER   LSL+G + RSN+FS+LVEIV  M
Sbjct: 495  VISTIIEVNCNCCRPDGALLAFNYSVTMGISIERTGYLSLVGLLNRSNMFSKLVEIVGEM 554

Query: 1147 VGSGVSLGTYLLSLVIYKLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDK 968
              +G SLG YL SL+IY+LG  +  +  L+IF  LPD+ K   TYTAL+  YF +R V+K
Sbjct: 555  TRAGHSLGIYLASLLIYRLGCARQLSIALKIFNLLPDNHKCVATYTALISIYFSARRVNK 614

Query: 967  GLDIFHTMRRNGVPASPSTYRLLIVGLKKAGRVYEAEKYIKEERSVQRGCFPQEAVSMEE 788
             L+I+  M + G   +  T+ +L+ GL++ GR  EA  + K ++++      QE +S E 
Sbjct: 615  ALEIYKIMCQKGNCPTSGTFNILVAGLERNGRFSEAGVHRKAKKNLNSNIGSQENLSTEG 674

Query: 787  HLCELLFSGGV 755
             +C+LLF+G V
Sbjct: 675  RICDLLFAGDV 685


>ref|XP_002525094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535553|gb|EEF37221.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 472

 Score =  335 bits (860), Expect = 2e-89
 Identities = 168/369 (45%), Positives = 251/369 (68%), Gaps = 4/369 (1%)
 Frame = -3

Query: 1849 FDNNRTKDATEVYKEMLESGCSPNCYTYTVLMEYLISTGRFKEALEIMSKMQEAGVQPDK 1670
            FDN R K+AT +YKEMLE G  PNC+TYTVLMEYL+ +G+ +EALEI  KMQEAGVQPDK
Sbjct: 102  FDNKRVKEATNIYKEMLECGIPPNCHTYTVLMEYLVVSGKCQEALEIFKKMQEAGVQPDK 161

Query: 1669 ATCNILVQKFSRAGEIWAVNHILKYMKEHKLVLRHPVYVQALQALKVAGESNELLKEANR 1490
            A CNILV++   AGE   +  IL+YMKE+ L LR+P++++AL+ L++AGE + LLK+ N 
Sbjct: 162  AMCNILVERCCEAGETNTMTPILQYMKENHLALRYPIFLEALKILRIAGECDALLKQVNP 221

Query: 1489 HLSLEGTDVEE----VTADFHSTVDTAIIKNLLAKRNFIAVEHIIDGMISTNIQVSSKLI 1322
            H + E  + ++     T+ ++  +D  ++  LL K+N +AV+H++ G++  N+ + S ++
Sbjct: 222  HCAAESINNDDSSEFTTSAYNDPIDKGLLLILLRKQNLVAVDHLLAGVLDKNMVLESWIV 281

Query: 1321 SAIIQSSCVNNRPTCAVSAYNYGIKMGICIERQACLSLIGFMIRSNLFSELVEIVENMVG 1142
            S II+ +C   RP  A+ A+ Y +++GI +ER A L+LIG MIRSN    ++EIV+  + 
Sbjct: 282  STIIEVNCSQCRPDSALMAFEYSMRVGIDLERTAYLALIGIMIRSNTSLWVLEIVKETIR 341

Query: 1141 SGVSLGTYLLSLVIYKLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDKGL 962
             G SLG YL +L+I++LGS + P    +IF  LPD+QK T TYTA++G YF +    K L
Sbjct: 342  VGHSLGLYLSALLIHRLGSARRPNCAAKIFDLLPDEQKCTATYTAMIGVYFSAGSAAKAL 401

Query: 961  DIFHTMRRNGVPASPSTYRLLIVGLKKAGRVYEAEKYIKEERSVQRGCFPQEAVSMEEHL 782
             I+ TM++N +  S  TY +L+ GL+K+GRV E + + KE+RS+         + MEE +
Sbjct: 402  KIYKTMKKNSINPSLGTYNVLLAGLEKSGRVCETDNFRKEKRSLMADGNRLSCLPMEEKI 461

Query: 781  CELLFSGGV 755
            C+LLF+G +
Sbjct: 462  CDLLFAGSL 470


>ref|XP_003524343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01390-like
            [Glycine max]
          Length = 585

 Score =  328 bits (842), Expect = 2e-87
 Identities = 171/370 (46%), Positives = 246/370 (66%), Gaps = 8/370 (2%)
 Frame = -3

Query: 1849 FDNNRTKDATEVYKEMLESGCSPNCYTYTVLMEYLISTGRFKEALEIMSKMQEAGVQPDK 1670
            F N R K+AT  YKEM+ S  +PNC+TYTVLM+YLI +G++KEALEI  KMQEAG QPDK
Sbjct: 211  FHNQRVKEATRAYKEMISSRVAPNCHTYTVLMDYLIGSGQYKEALEIFEKMQEAGAQPDK 270

Query: 1669 ATCNILVQKFSRAGEIWAVNHILKYMKEHKLVLRHPVYVQALQALKVAGESNELLKEANR 1490
            A CNIL+++ S+ G    + HIL+YMKE++LVLR+PV+V+AL+ALK+AGES+ LL++ N 
Sbjct: 271  AACNILIERCSKVGGTEFMTHILQYMKENRLVLRYPVFVKALEALKIAGESDTLLRQVNP 330

Query: 1489 HLSLE------GTDVEEVTADFHSTVDTAIIKNLLAKRNFIAVEHIIDGMISTNIQVSSK 1328
               ++       ++   V AD  + +D  ++  LL  RN +A++H++ GM+   I +  K
Sbjct: 331  QFYMDCIIRKKASNTITVAADCPTNIDKELLFVLLKNRNVVAIDHLLTGMMDKKISLDHK 390

Query: 1327 LISAIIQSSCVNNRPTCAVSAYNYGIKMGICIERQACLSLIGFMIRSNLFSELVEIVENM 1148
            ++S II+ +C + RP  A+ A+ Y + MGI IER   LSLIG +IRSN+FS+L EIVE M
Sbjct: 391  VVSTIIEVNCSHCRPEGALLAFKYSVTMGISIERTGYLSLIGLLIRSNMFSKLAEIVEKM 450

Query: 1147 VGSGVSLGTYLLSLVIYKLGSTQMPASCLRIFCSLPDDQKNTVTYTALMGAYFCSREVDK 968
              +G SLG YL SL+I++LG  +     ++IF  LPD+ K + TYTAL+  YF  R V++
Sbjct: 451  TRAGHSLGIYLASLLIFRLGCARKHTLAMKIFNLLPDNHKCSATYTALISVYFSVRRVNE 510

Query: 967  GLDIFHTMRRNGVPASPSTYRLLIVGLKKAGRVYEAEKY--IKEERSVQRGCFPQEAVSM 794
             L+I+  M   G      TY +LI GL++ G+  EAE Y   K+ +S++     QE+V +
Sbjct: 511  ALEIYKIMCSKGFCPVLGTYDVLIAGLERNGKYAEAEHYRKAKKRKSLRANSGSQESVCI 570

Query: 793  EEHLCELLFS 764
            E  +C LLFS
Sbjct: 571  EGKICNLLFS 580