BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026961
         (860 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002533116.1| pentatricopeptide repeat-containing protein,...   128   1e-27
emb|CBI22241.3| unnamed protein product [Vitis vinifera]              127   4e-27
ref|XP_002278558.1| PREDICTED: pentatricopeptide repeat-containi...   127   4e-27
ref|XP_002323869.1| predicted protein [Populus trichocarpa] gi|2...   120   3e-25
ref|XP_004163793.1| PREDICTED: pentatricopeptide repeat-containi...   117   4e-24

>ref|XP_002533116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223527079|gb|EEF29261.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1204

 Score =  128 bits (322), Expect = 1e-27
 Identities = 62/123 (50%), Positives = 85/123 (69%), Gaps = 1/123 (0%)
 Frame = +3

Query: 9    FDYVIQGLGICKALDDALNLHAEMLARGFKPSIKSWDMIIQGLCAEGQTVESERFLDCMV 188
            +D +IQGL I   L++A++ H EML R  +PS+K+W+MI+  LC  G+T E+E  L  M 
Sbjct: 1050 YDCIIQGLCIWNQLNEAMDFHTEMLDRELRPSMKTWNMIVHNLCQLGRTAEAEGLLISMA 1109

Query: 189  QLGQTPTPKLYQVVIDKYSSENRLDKASALLHKMQKHGYVPDFKTHWSLISNLSK-SNKE 365
            QLG+TP  K+Y  VI++Y  EN   KAS L+  MQ++GY PDF THWSLISNL K  +K+
Sbjct: 1110 QLGETPPGKMYSTVINRYRFENNPRKASQLMQMMQRNGYEPDFDTHWSLISNLQKFKDKD 1169

Query: 366  NTE 374
            N +
Sbjct: 1170 NNQ 1172


>emb|CBI22241.3| unnamed protein product [Vitis vinifera]
          Length = 1256

 Score =  127 bits (318), Expect = 4e-27
 Identities = 60/123 (48%), Positives = 83/123 (67%)
 Frame = +3

Query: 9    FDYVIQGLGICKALDDALNLHAEMLARGFKPSIKSWDMIIQGLCAEGQTVESERFLDCMV 188
            +D VIQG      LD+A++ H EML R  +PSIK+WD +    C +G+T E+E  L  MV
Sbjct: 1112 YDSVIQGFCTVNRLDEAMDFHTEMLDRKLRPSIKAWDALAHKFCQDGRTAEAESLLVSMV 1171

Query: 189  QLGQTPTPKLYQVVIDKYSSENRLDKASALLHKMQKHGYVPDFKTHWSLISNLSKSNKEN 368
            Q+G+TPT ++Y  +I++  SEN L KAS LL  MQ  G+ PDF THWSLISNL++S  ++
Sbjct: 1172 QMGETPTREMYTSLINRLRSENNLSKASELLQAMQLSGHAPDFGTHWSLISNLNRSKDKD 1231

Query: 369  TEN 377
            + N
Sbjct: 1232 SAN 1234


>ref|XP_002278558.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like
            [Vitis vinifera]
          Length = 1273

 Score =  127 bits (318), Expect = 4e-27
 Identities = 60/123 (48%), Positives = 83/123 (67%)
 Frame = +3

Query: 9    FDYVIQGLGICKALDDALNLHAEMLARGFKPSIKSWDMIIQGLCAEGQTVESERFLDCMV 188
            +D VIQG      LD+A++ H EML R  +PSIK+WD +    C +G+T E+E  L  MV
Sbjct: 1129 YDSVIQGFCTVNRLDEAMDFHTEMLDRKLRPSIKAWDALAHKFCQDGRTAEAESLLVSMV 1188

Query: 189  QLGQTPTPKLYQVVIDKYSSENRLDKASALLHKMQKHGYVPDFKTHWSLISNLSKSNKEN 368
            Q+G+TPT ++Y  +I++  SEN L KAS LL  MQ  G+ PDF THWSLISNL++S  ++
Sbjct: 1189 QMGETPTREMYTSLINRLRSENNLSKASELLQAMQLSGHAPDFGTHWSLISNLNRSKDKD 1248

Query: 369  TEN 377
            + N
Sbjct: 1249 SAN 1251


>ref|XP_002323869.1| predicted protein [Populus trichocarpa] gi|222866871|gb|EEF04002.1|
            predicted protein [Populus trichocarpa]
          Length = 1158

 Score =  120 bits (302), Expect = 3e-25
 Identities = 60/122 (49%), Positives = 80/122 (65%)
 Frame = +3

Query: 3    TCFDYVIQGLGICKALDDALNLHAEMLARGFKPSIKSWDMIIQGLCAEGQTVESERFLDC 182
            T +D VI G      L+ A++ HAEML R  KPSI +WD++++  C +GQ  E+ + L  
Sbjct: 1008 TSYDSVICGFCSRNQLNQAMDFHAEMLDRNLKPSINTWDLLVKQYCQQGQPAEAAKLLLS 1067

Query: 183  MVQLGQTPTPKLYQVVIDKYSSENRLDKASALLHKMQKHGYVPDFKTHWSLISNLSKSNK 362
            MVQ+G+TPT  +Y  VID Y  EN   KAS L+  MQ+ GY PDF THWSLISNLS S+ 
Sbjct: 1068 MVQVGETPTRLMYCSVIDGYRMENNPRKASELMQMMQQSGYEPDFDTHWSLISNLSNSSD 1127

Query: 363  EN 368
            ++
Sbjct: 1128 KD 1129



 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
 Frame = +3

Query: 12  DYVIQGLGIC-----KALDDALNLHAEMLARGFKPSIKSWDMIIQGLCAEGQTVESERFL 176
           D V  G+ IC     + L  A N  +E+L+RG KP+I  +  +I  L  EG    ++  L
Sbjct: 279 DEVTFGILICWCCRERKLSGAFNYLSELLSRGLKPNIWCYHALISALFKEGMWEHAQDIL 338

Query: 177 DCMVQLGQTPTPKLYQVVIDKYSSENRLDKASALLHKMQKHGYV 308
           D MV +G  P    +++++  Y    R D+   ++H+M   G +
Sbjct: 339 DEMVDMGTAPVLSTFKILLAGYCRARRFDEVKVVIHEMVNRGLI 382


>ref|XP_004163793.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like
            [Cucumis sativus]
          Length = 1225

 Score =  117 bits (292), Expect = 4e-24
 Identities = 56/125 (44%), Positives = 82/125 (65%)
 Frame = +3

Query: 3    TCFDYVIQGLGICKALDDALNLHAEMLARGFKPSIKSWDMIIQGLCAEGQTVESERFLDC 182
            T +D+VIQ     K L++A++ H EML R  KPSI++WD ++  LC EGQT E+ER L  
Sbjct: 1078 TSYDFVIQSCCAYKKLEEAVDFHTEMLDRRLKPSIRTWDKLVYLLCREGQTKEAERVLMS 1137

Query: 183  MVQLGQTPTPKLYQVVIDKYSSENRLDKASALLHKMQKHGYVPDFKTHWSLISNLSKSNK 362
            M  +G+ P+   Y  ++D+Y  EN L+KAS  +  MQ+ GY  DF+T WSLIS L+ +N 
Sbjct: 1138 MTAMGEKPSKDAYCSMLDRYRYENNLEKASETMKAMQESGYELDFETQWSLISKLNDTNL 1197

Query: 363  ENTEN 377
            +++ N
Sbjct: 1198 KDSNN 1202