BLASTX nr result

ID: Coptis23_contig00026959 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026959
         (465 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511362.1| adenosine diphosphatase, putative [Ricinus c...   102   4e-20
ref|XP_003550722.1| PREDICTED: nucleoside-diphosphatase mig-23-l...    96   3e-18
ref|XP_002321616.1| predicted protein [Populus trichocarpa] gi|2...    95   5e-18
ref|XP_002278485.2| PREDICTED: nucleoside-diphosphatase mig-23-l...    94   9e-18
emb|CBI14994.3| unnamed protein product [Vitis vinifera]               94   9e-18

>ref|XP_002511362.1| adenosine diphosphatase, putative [Ricinus communis]
           gi|223550477|gb|EEF51964.1| adenosine diphosphatase,
           putative [Ricinus communis]
          Length = 440

 Score =  102 bits (253), Expect = 4e-20
 Identities = 54/117 (46%), Positives = 71/117 (60%), Gaps = 23/117 (19%)
 Frame = +2

Query: 41  SHNGVTLQNLTVSPGLVARFHALSGFFAVYNVLNLSPRTNSTTFLEKGWELCSQLWSD-- 214
           S+NG  + NLT +    +RFHALSGFFAVYN+LNL+P+ N T+  EK  +LCS  W D  
Sbjct: 274 SYNGNRIFNLTAATNPTSRFHALSGFFAVYNMLNLAPQANMTSIWEKREQLCSTSWGDLS 333

Query: 215 ---------------------LIEDALCMDNPELIFGPGDVSWTLGAALVEGKSIRL 322
                                LI+DALC+ + E+IF PGD+ WTLGAAL+EG+ + L
Sbjct: 334 NISGNQNSFAHYCFQVPYMASLIKDALCLGDFEIIFDPGDIFWTLGAALIEGEYLWL 390


>ref|XP_003550722.1| PREDICTED: nucleoside-diphosphatase mig-23-like [Glycine max]
          Length = 558

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 64/158 (40%), Positives = 84/158 (53%), Gaps = 24/158 (15%)
 Frame = +2

Query: 50  GVTLQNLTVSPGLVARFHALSGFFAVYNVLNLSPRTNSTTFLEKGWELCSQLWS------ 211
           G  + NLT     + +FHALSGFF VYN L LSPRTN T   E G +LCS LWS      
Sbjct: 376 GTGILNLTAVAHPI-KFHALSGFFFVYNKLKLSPRTNLTMVWESGKQLCSNLWSGLSNVS 434

Query: 212 -----------------DLIEDALCMDNPELIFGPGDVSWTLGAALVEGKSIRLIK*VRS 340
                             LIE  LC+ + E++FGPGD+SWTLGAAL+EGK + L     S
Sbjct: 435 DNPKYAGQFCFRVAYMASLIEYGLCLGDVEMVFGPGDISWTLGAALIEGKFLWL----NS 490

Query: 341 SRWQLNQLYSE-KNGSPLFSSFFYPSISLSLFYCLWKS 451
           +R + + + S  KN   + S  F  ++ L L   ++ S
Sbjct: 491 TRHKSHVIISTLKNVKVMSSPTFLFAVLLLLLLIVYFS 528


>ref|XP_002321616.1| predicted protein [Populus trichocarpa] gi|222868612|gb|EEF05743.1|
           predicted protein [Populus trichocarpa]
          Length = 543

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 52/116 (44%), Positives = 65/116 (56%), Gaps = 23/116 (19%)
 Frame = +2

Query: 32  TKLSHNGVTLQNLTVSPGLVARFHALSGFFAVYNVLNLSPRTNSTTFLEKGWELCSQLWS 211
           T LS  G    N         RFHALSGFFAVYN+L+L+P  N T   EKG ++CS+ W 
Sbjct: 366 TGLSSYGSDTLNFIAGTHPSRRFHALSGFFAVYNMLDLAPIANLTKIWEKGQQMCSKSWP 425

Query: 212 D-----------------------LIEDALCMDNPELIFGPGDVSWTLGAALVEGK 310
           D                       LIEDALC+ + E++FGPGD+SWTLGA+LVE +
Sbjct: 426 DSSNTSGNQNNLGKYCFRVPYMASLIEDALCLGDKEIVFGPGDLSWTLGASLVEAE 481


>ref|XP_002278485.2| PREDICTED: nucleoside-diphosphatase mig-23-like [Vitis vinifera]
          Length = 547

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 65/157 (41%), Positives = 81/157 (51%), Gaps = 24/157 (15%)
 Frame = +2

Query: 41  SHNGVTLQNLTVSPGLVARFHALSGFFAVYNVLNLSPRTNSTTFLEKGWELCSQ------ 202
           SH+G  + N   +    A FHALSGFF VY +LNLS R N T   E+G  LCS+      
Sbjct: 366 SHSGSNILNSKATTHAAACFHALSGFFVVYTMLNLSQRANMTEIWERGQLLCSRSDAHFG 425

Query: 203 ---------------LWSDLIEDALCMDNPELIFGPGDVSWTLGAALVEGKSIRLIK*VR 337
                            + LIED LC+ + E+ FGPGDVSWTLGAALVEG+ + L     
Sbjct: 426 SISGNYARQFCFSVPYLASLIEDGLCLGDAEINFGPGDVSWTLGAALVEGEYLWLS--TT 483

Query: 338 SSRWQLNQLYSEKNGSPLFSSFFYPSISLSLF---YC 439
           +SR  ++ L   K  S L S FF   + L L    YC
Sbjct: 484 NSRLSISSL---KIKSVLASPFFLFILLLGLLLIVYC 517


>emb|CBI14994.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 65/157 (41%), Positives = 81/157 (51%), Gaps = 24/157 (15%)
 Frame = +2

Query: 41  SHNGVTLQNLTVSPGLVARFHALSGFFAVYNVLNLSPRTNSTTFLEKGWELCSQ------ 202
           SH+G  + N   +    A FHALSGFF VY +LNLS R N T   E+G  LCS+      
Sbjct: 443 SHSGSNILNSKATTHAAACFHALSGFFVVYTMLNLSQRANMTEIWERGQLLCSRSDAHFG 502

Query: 203 ---------------LWSDLIEDALCMDNPELIFGPGDVSWTLGAALVEGKSIRLIK*VR 337
                            + LIED LC+ + E+ FGPGDVSWTLGAALVEG+ + L     
Sbjct: 503 SISGNYARQFCFSVPYLASLIEDGLCLGDAEINFGPGDVSWTLGAALVEGEYLWLS--TT 560

Query: 338 SSRWQLNQLYSEKNGSPLFSSFFYPSISLSLF---YC 439
           +SR  ++ L   K  S L S FF   + L L    YC
Sbjct: 561 NSRLSISSL---KIKSVLASPFFLFILLLGLLLIVYC 594


Top