BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026942
         (913 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD96948.1| hypothetical protein [Cleome spinosa]                   64   4e-14
gb|ABW81094.1| RT6non-ltr [Cleome spinosa]                             66   3e-13
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA...    63   1e-12
gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thali...    63   1e-12
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    55   1e-10

>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
          Length = 539

 Score = 64.3 bits (155), Expect(2) = 4e-14
 Identities = 25/54 (46%), Positives = 39/54 (72%)
 Frame = +3

Query: 3   GIKQGDPISPYLFVLLTEVLAAKLEKGRQMKLFKLHPKCFNPIITHMCLADELL 164
           G++QGDP+SPYLF++  EVL+  L++        LHPKC +P+ITH+  AD+++
Sbjct: 102 GLRQGDPLSPYLFIMSMEVLSRMLDRCAAESRLSLHPKCHSPVITHLAFADDIM 155



 Score = 40.0 bits (92), Expect(2) = 4e-14
 Identities = 22/70 (31%), Positives = 32/70 (45%)
 Frame = +1

Query: 151 LMSFCRAELESTKAIMNTFKGFEEISGLKMTSHKSSIMVRGLSSEGAVDLARAICVKLVI 330
           +M F   E  S   + NT   F   SGL + + K+ I +RGL+   A  L   I      
Sbjct: 154 IMIFTSGETRSLLEVKNTLDSFSRASGLYLNTEKTEIFLRGLNGTEASTLCAVIGFTRGY 213

Query: 331 PPIKYQGICL 360
            P++Y G+ L
Sbjct: 214 LPVRYLGVSL 223


>gb|ABW81094.1| RT6non-ltr [Cleome spinosa]
          Length = 459

 Score = 66.2 bits (160), Expect(2) = 3e-13
 Identities = 26/54 (48%), Positives = 41/54 (75%)
 Frame = +3

Query: 3   GIKQGDPISPYLFVLLTEVLAAKLEKGRQMKLFKLHPKCFNPIITHMCLADELL 164
           G++QGDP+SPYLF++  EVL+ KL++   +   +LH KC NP++TH+  AD+L+
Sbjct: 19  GLRQGDPLSPYLFIIAMEVLSRKLDQAASIGQLQLHSKCANPLLTHLIFADDLV 72



 Score = 35.4 bits (80), Expect(2) = 3e-13
 Identities = 19/68 (27%), Positives = 36/68 (52%)
 Frame = +1

Query: 151 LMSFCRAELESTKAIMNTFKGFEEISGLKMTSHKSSIMVRGLSSEGAVDLARAICVKLVI 330
           L+ F +A  +S +A+ N    F   SGL++ + K  + + GL+     +L+  + + L  
Sbjct: 71  LVIFSKASRQSMQAVQNCLNWFGRNSGLEVNTGKCEMFLGGLTDSEKQELSSCMGITLGN 130

Query: 331 PPIKYQGI 354
            P+KY G+
Sbjct: 131 FPMKYLGL 138


>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
           AT4g02490 [Arabidopsis thaliana]
          Length = 657

 Score = 63.2 bits (152), Expect(3) = 1e-12
 Identities = 28/54 (51%), Positives = 39/54 (72%)
 Frame = +3

Query: 3   GIKQGDPISPYLFVLLTEVLAAKLEKGRQMKLFKLHPKCFNPIITHMCLADELL 164
           GI+QGDP+S +LFVL+ ++LA  L+ G     F LHPKC  P+ITH+  AD++L
Sbjct: 196 GIRQGDPMSSHLFVLVMDILARSLDLGAVEGRFVLHPKCLAPMITHLSFADDIL 249



 Score = 32.7 bits (73), Expect(3) = 1e-12
 Identities = 19/70 (27%), Positives = 38/70 (54%)
 Frame = +1

Query: 151 LMSFCRAELESTKAIMNTFKGFEEISGLKMTSHKSSIMVRGLSSEGAVDLARAICVKLVI 330
           ++ FC   L S  AI++    F++ SGL +   K+++++ G + E    +A ++ V    
Sbjct: 248 ILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGGNFERNRIMAASLGVSQGS 307

Query: 331 PPIKYQGICL 360
            P++Y G+ L
Sbjct: 308 LPVRYLGVPL 317



 Score = 23.1 bits (48), Expect(3) = 1e-12
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 354 MPLVASQLGIGDC*LLIDTMTIKITSWKLKSLYYA 458
           +PL++ ++   D   L+D +  + TSW  + L +A
Sbjct: 315 VPLMSQKMKKHDYQPLVDRINSRFTSWTARHLSFA 349


>gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thaliana]
          Length = 543

 Score = 63.2 bits (152), Expect(3) = 1e-12
 Identities = 28/54 (51%), Positives = 39/54 (72%)
 Frame = +3

Query: 3   GIKQGDPISPYLFVLLTEVLAAKLEKGRQMKLFKLHPKCFNPIITHMCLADELL 164
           GI+QGDP+S +LFVL+ ++LA  L+ G     F LHPKC  P+ITH+  AD++L
Sbjct: 196 GIRQGDPMSSHLFVLVMDILARSLDLGAVEGRFVLHPKCLAPMITHLSFADDIL 249



 Score = 32.7 bits (73), Expect(3) = 1e-12
 Identities = 19/70 (27%), Positives = 38/70 (54%)
 Frame = +1

Query: 151 LMSFCRAELESTKAIMNTFKGFEEISGLKMTSHKSSIMVRGLSSEGAVDLARAICVKLVI 330
           ++ FC   L S  AI++    F++ SGL +   K+++++ G + E    +A ++ V    
Sbjct: 248 ILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGGNFERNRIMAASLGVSQGS 307

Query: 331 PPIKYQGICL 360
            P++Y G+ L
Sbjct: 308 LPVRYLGVPL 317



 Score = 23.1 bits (48), Expect(3) = 1e-12
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 354 MPLVASQLGIGDC*LLIDTMTIKITSWKLKSLYYA 458
           +PL++ ++   D   L+D +  + TSW  + L +A
Sbjct: 315 VPLMSQKMKKHDYQPLVDRINSRFTSWTARHLSFA 349


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1352

 Score = 54.7 bits (130), Expect(3) = 1e-10
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = +3

Query: 3   GIKQGDPISPYLFVLLTEVLAAKLEKGRQMKLFKLHPKCFNPIITHMCLADELL 164
           G++QG  +SPYL+V+   VL+  L+K    K    HP+C N  +TH+C AD+++
Sbjct: 802 GLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCFADDIM 855



 Score = 34.3 bits (77), Expect(3) = 1e-10
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +1

Query: 151  LMSFCRAELESTKAIMNTFKGFEEISGLKMTSHKSSIMVRGLSSEGAVDLARAICVKLVI 330
            +M F     +S +  +  F+ F  +S LK++  KS+I + G+S      + +    +L  
Sbjct: 854  IMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGT 913

Query: 331  PPIKYQGICL 360
             P+KY G+ L
Sbjct: 914  LPVKYLGLPL 923



 Score = 22.7 bits (47), Expect(3) = 1e-10
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 354  MPLVASQLGIGDC*LLIDTMTIKITSWKLKSLYYA 458
            +PL+  ++   D   L++ +  +ITSW  + L +A
Sbjct: 921  LPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFA 955