BLASTX nr result

ID: Coptis23_contig00026926 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026926
         (347 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283066.1| PREDICTED: vacuolar protein sorting-associat...    79   5e-13
ref|XP_002330526.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
ref|XP_002308308.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
ref|XP_002275998.1| PREDICTED: vacuolar protein sorting-associat...    77   2e-12
ref|XP_002514179.1| Charged multivesicular body protein 4b, puta...    76   3e-12

>ref|XP_002283066.1| PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2
           [Vitis vinifera] gi|147840660|emb|CAN61998.1|
           hypothetical protein VITISV_007873 [Vitis vinifera]
           gi|297738716|emb|CBI27961.3| unnamed protein product
           [Vitis vinifera]
          Length = 218

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 50/108 (46%), Positives = 59/108 (54%), Gaps = 18/108 (16%)
 Frame = -2

Query: 346 KEFSRAKNKRGAIHCLRRKRVYEQQVEHLEKCXXXXXXXXXXXXXIR-----------GV 200
           KEF+RAKNKR AI CL+RKR+YEQQ+E L                 +           G 
Sbjct: 48  KEFTRAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGA 107

Query: 199 AVMEAMQKAVKIDG-------MIEQTEDSKLIQYALLTPIGSFANFDE 77
           A M+AMQKA  ID        + EQTE+ K IQ AL TPIGS A+FDE
Sbjct: 108 AAMKAMQKATNIDDVDQTMDEINEQTENMKQIQEALSTPIGSAADFDE 155


>ref|XP_002330526.1| predicted protein [Populus trichocarpa] gi|222872460|gb|EEF09591.1|
           predicted protein [Populus trichocarpa]
          Length = 207

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 49/109 (44%), Positives = 59/109 (54%), Gaps = 18/109 (16%)
 Frame = -2

Query: 346 KEFSRAKNKRGAIHCLRRKRVYEQQVEHLEKCXXXXXXXXXXXXXIR-----------GV 200
           KEF+R KNKR AI CL+RKR+YEQQ+E L                 +           G 
Sbjct: 48  KEFTRGKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGA 107

Query: 199 AVMEAMQKAVKIDG-------MIEQTEDSKLIQYALLTPIGSFANFDEV 74
           + M+AMQKA  ID        + EQTE+ K IQ AL TPIGS A+FDEV
Sbjct: 108 SAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGSAADFDEV 156


>ref|XP_002308308.1| predicted protein [Populus trichocarpa] gi|222854284|gb|EEE91831.1|
           predicted protein [Populus trichocarpa]
          Length = 252

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 49/109 (44%), Positives = 59/109 (54%), Gaps = 18/109 (16%)
 Frame = -2

Query: 346 KEFSRAKNKRGAIHCLRRKRVYEQQVEHLEKCXXXXXXXXXXXXXIR-----------GV 200
           KEF+R KNKR AI CL+RKR+YEQQ+E L                 +           G 
Sbjct: 48  KEFTRGKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGA 107

Query: 199 AVMEAMQKAVKIDG-------MIEQTEDSKLIQYALLTPIGSFANFDEV 74
           A M+AMQKA  ID        + EQTE+ K IQ AL TPIG+ A+FDEV
Sbjct: 108 AAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEV 156


>ref|XP_002275998.1| PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2
           [Vitis vinifera] gi|147832595|emb|CAN68229.1|
           hypothetical protein VITISV_026042 [Vitis vinifera]
           gi|296081601|emb|CBI20606.3| unnamed protein product
           [Vitis vinifera]
          Length = 216

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 48/108 (44%), Positives = 59/108 (54%), Gaps = 18/108 (16%)
 Frame = -2

Query: 346 KEFSRAKNKRGAIHCLRRKRVYEQQVEHLEKCXXXXXXXXXXXXXIR-----------GV 200
           KEF+RAKNKR AI CL+RKR+YEQQ+E L                 +           G 
Sbjct: 48  KEFTRAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMILLEGAKATTETVDALRTGA 107

Query: 199 AVMEAMQKAVKIDG-------MIEQTEDSKLIQYALLTPIGSFANFDE 77
           + M+AMQKA  ID        + EQTE+ K IQ AL TPIG+ A+FDE
Sbjct: 108 SAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPIGAAADFDE 155


>ref|XP_002514179.1| Charged multivesicular body protein 4b, putative [Ricinus communis]
           gi|223546635|gb|EEF48133.1| Charged multivesicular body
           protein 4b, putative [Ricinus communis]
          Length = 218

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 48/108 (44%), Positives = 58/108 (53%), Gaps = 18/108 (16%)
 Frame = -2

Query: 346 KEFSRAKNKRGAIHCLRRKRVYEQQVEHLEKCXXXXXXXXXXXXXIR-----------GV 200
           KEF+R KNKR AI CL+RKR+YEQQ+E L                 +           G 
Sbjct: 48  KEFTRTKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGA 107

Query: 199 AVMEAMQKAVKIDG-------MIEQTEDSKLIQYALLTPIGSFANFDE 77
           A M+AMQKA  ID        + EQTE+ K IQ AL TPIG+ A+FDE
Sbjct: 108 AAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGAAADFDE 155


Top