BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026855
         (671 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319679.1| f-box family protein [Populus trichocarpa] g...    59   9e-07
ref|XP_002532278.1| conserved hypothetical protein [Ricinus comm...    58   2e-06
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...    57   4e-06
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi...    57   4e-06

>ref|XP_002319679.1| f-box family protein [Populus trichocarpa]
           gi|222858055|gb|EEE95602.1| f-box family protein
           [Populus trichocarpa]
          Length = 310

 Score = 58.9 bits (141), Expect = 9e-07
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
 Frame = +3

Query: 48  SGVLANYGALHWITEELKCCNDHKKIIAFDLATEEFYVVPSPPCFRRRRKRYGPVQLGGC 227
           S VL N G L+W T  +  C+  + I++FDL+ E+FY VP P C    +  +  V LGGC
Sbjct: 187 SQVLVN-GRLNWATWPIYRCSSARLIVSFDLSEEKFYEVPRPDCGSLDKFNHNLVVLGGC 245

Query: 228 LCAAEY-LNGNTVIWAMKGKVLLKYTVKKT 314
           L A+ Y  +G   IW MK     +Y VK++
Sbjct: 246 LSASVYRKDGYFEIWVMK-----EYNVKES 270


>ref|XP_002532278.1| conserved hypothetical protein [Ricinus communis]
           gi|223528012|gb|EEF30093.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 263

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
 Frame = +3

Query: 39  RSRSGVLANYGALHWITEELKCCNDHKKIIAFDLATEEFYVVPSPPCFRRRRKRYGPVQL 218
           R +S  L N G LHW++   +  N  +++++ DL  E+F  VP P C    R  Y  V L
Sbjct: 83  RRQSEALVN-GRLHWVSRPRRY-NPARRLVSLDLVDEQFREVPKPDCGGLSRCNYHLVVL 140

Query: 219 GGCLCAAEYLN-GNTVIWAMKGKVLLKYTVKKTMESQEI 332
            GCL AA Y N G   IW MK     +Y VK++   Q I
Sbjct: 141 KGCLSAAVYCNYGRLEIWTMK-----EYNVKESWVKQYI 174


>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
           gi|222861279|gb|EEE98821.1| f-box family protein
           [Populus trichocarpa]
          Length = 422

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 39/94 (41%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
 Frame = +3

Query: 39  RSRSGVLANYGALHWITEELKCCNDH-KKIIAFDLATEEFYVVPSPPCFRRRRKRYGPVQ 215
           R  SG L N G LHWI+    C N   +++++FDL  E+F  V  P C    R  Y  V 
Sbjct: 230 RRASGALVN-GRLHWISRP--CRNKPARRLVSFDLTDEQFREVSKPDCGGLNRCNYHLVV 286

Query: 216 LGGCLCAAEYLN-GNTVIWAMKGKVLLKYTVKKT 314
           L GCL AA Y N G   IW MK     +Y VK++
Sbjct: 287 LRGCLSAAVYCNYGRLEIWVMK-----EYNVKES 315


>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
           gi|147785390|emb|CAN68678.1| hypothetical protein
           VITISV_041941 [Vitis vinifera]
          Length = 409

 Score = 56.6 bits (135), Expect = 4e-06
 Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
 Frame = +3

Query: 24  EVSPQRSR--SGVLANYGALHWITEELKCCNDHKKIIAFDLATEEFYVVPSPPCFRRRRK 197
           +VS Q  R  S  L N G LHW+T   +     + I++FDLA E+F  +P P C    R 
Sbjct: 223 KVSYQLDRWPSEALVN-GRLHWVTRPRRYVT--RFIVSFDLADEQFREIPKPDCGGLSRC 279

Query: 198 RYGPVQLGGCLCAAEY-LNGNTVIWAMKGKVLLKYTVKKTMESQEISLLSCDPKTNILGK 374
            Y  + LGGCL AA +  NG   +W MK     +Y VK++   +E ++ +  PK    G 
Sbjct: 280 NYHLLVLGGCLSAAVHRSNGKLEVWVMK-----EYDVKESW-IKEFNIGAHLPK----GL 329

Query: 375 IKDCGAPYRL 404
            +D   P+R+
Sbjct: 330 KQDVNRPHRI 339