BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026775
         (327 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270274.1| PREDICTED: ribosomal RNA small subunit methy...   127   9e-28
ref|XP_003552364.1| PREDICTED: ribosomal RNA small subunit methy...   112   3e-23
ref|XP_003534590.1| PREDICTED: ribosomal RNA small subunit methy...   108   3e-22
ref|XP_003623846.1| Ribosomal RNA small subunit methyltransferas...   107   1e-21
ref|XP_002511789.1| dimethyladenosine transferase, putative [Ric...   105   5e-21

>ref|XP_002270274.1| PREDICTED: ribosomal RNA small subunit methyltransferase A [Vitis
           vinifera] gi|296089082|emb|CBI38785.3| unnamed protein
           product [Vitis vinifera]
          Length = 335

 Score =  127 bits (319), Expect = 9e-28
 Identities = 69/109 (63%), Positives = 83/109 (76%), Gaps = 1/109 (0%)
 Frame = -3

Query: 325 LLHQSLPPFPSFPTLHTQPPSSHPL-HTIPQHNIRRSSCIIVLCARSEDDYHATLKALKS 149
           LLH  LPP P   T+  +   SHP   ++ Q + R   CI   CARS+DDYHATL AL S
Sbjct: 5   LLHH-LPPTPLSTTIKIR---SHPKPSSLVQGSTRTPLCIT--CARSQDDYHATLDALNS 58

Query: 148 KGRTPRKSLGQHYMLNTAINDKLVETAEVRDGDVVLEIGPGTGSLTNVL 2
           KGRTPRKSLGQHYMLN++IN++L +TA++RDGDV+LEIGPGTGSLTNVL
Sbjct: 59  KGRTPRKSLGQHYMLNSSINEQLADTADIRDGDVILEIGPGTGSLTNVL 107


>ref|XP_003552364.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like
           [Glycine max]
          Length = 341

 Score =  112 bits (280), Expect = 3e-23
 Identities = 68/113 (60%), Positives = 74/113 (65%), Gaps = 15/113 (13%)
 Frame = -3

Query: 295 SFPTLHTQPPSSHPL---HTIPQHN----IRRSSCIIVLCA--------RSEDDYHATLK 161
           S  +L T PP SH L   H  P H+    +RR +  +V CA        RS DDYHATLK
Sbjct: 5   SLCSLQTFPPISHALLNRHHKPAHDSTAGVRRRTPYVV-CAEKGSRASTRSADDYHATLK 63

Query: 160 ALKSKGRTPRKSLGQHYMLNTAINDKLVETAEVRDGDVVLEIGPGTGSLTNVL 2
           AL SKGR PRKSLGQHYMLN  IND+L   A V  GDVVLEIGPGTGSLTNVL
Sbjct: 64  ALNSKGRFPRKSLGQHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVL 116


>ref|XP_003534590.1| PREDICTED: ribosomal RNA small subunit methyltransferase A-like
           [Glycine max]
          Length = 341

 Score =  108 bits (271), Expect = 3e-22
 Identities = 64/112 (57%), Positives = 70/112 (62%), Gaps = 14/112 (12%)
 Frame = -3

Query: 295 SFPTLHTQPPSSHPL---HTIPQHN----IRRSSCIIV-------LCARSEDDYHATLKA 158
           S  +L   PP SH L   H  P H+    +R  +  +V          RS DDYHATLKA
Sbjct: 5   SLCSLQASPPISHALLNRHHKPAHDSTAGVRNRTPYVVSSERSSTASTRSADDYHATLKA 64

Query: 157 LKSKGRTPRKSLGQHYMLNTAINDKLVETAEVRDGDVVLEIGPGTGSLTNVL 2
           L SKGR PRKSLGQHYMLN  IND+L   A V  GDVVLEIGPGTGSLTNVL
Sbjct: 65  LNSKGRFPRKSLGQHYMLNADINDQLAGAAGVEQGDVVLEIGPGTGSLTNVL 116


>ref|XP_003623846.1| Ribosomal RNA small subunit methyltransferase A [Medicago
           truncatula] gi|124360236|gb|ABN08249.1| SAM (and some
           other nucleotide) binding motif [Medicago truncatula]
           gi|124360864|gb|ABN08836.1| SAM (and some other
           nucleotide) binding motif [Medicago truncatula]
           gi|355498861|gb|AES80064.1| Ribosomal RNA small subunit
           methyltransferase A [Medicago truncatula]
          Length = 349

 Score =  107 bits (266), Expect = 1e-21
 Identities = 61/116 (52%), Positives = 75/116 (64%), Gaps = 11/116 (9%)
 Frame = -3

Query: 316 QSLPPFP---SFPTLHTQPPSSHPLHTIPQHNIRRSSCIIVLCAR--------SEDDYHA 170
           Q+LPP     +F + H  PP  +P         +RS    V C R        ++DDYHA
Sbjct: 12  QTLPPISHNATFNSRHKPPPPRNPTGD------KRSRKFYVACGRGNNRASTTNKDDYHA 65

Query: 169 TLKALKSKGRTPRKSLGQHYMLNTAINDKLVETAEVRDGDVVLEIGPGTGSLTNVL 2
           TLKAL SKGR+P+KSLGQ+YMLN+ IN++LV  A V +GDVVLEIGPGTGSLTN L
Sbjct: 66  TLKALNSKGRSPKKSLGQNYMLNSDINEQLVGVAGVEEGDVVLEIGPGTGSLTNTL 121


>ref|XP_002511789.1| dimethyladenosine transferase, putative [Ricinus communis]
           gi|223548969|gb|EEF50458.1| dimethyladenosine
           transferase, putative [Ricinus communis]
          Length = 338

 Score =  105 bits (261), Expect = 5e-21
 Identities = 58/108 (53%), Positives = 71/108 (65%), Gaps = 5/108 (4%)
 Frame = -3

Query: 310 LPPFPSFPTLHTQPPSSHPLHTIPQHN---IRRSSCIIVLC--ARSEDDYHATLKALKSK 146
           L P  S PTL  +   S     +P  N     R   +++ C   RS DDY ATLKAL S+
Sbjct: 8   LQPLASIPTLTVRAKPS-----VPSRNGITSARKKRVLIRCDTKRSSDDYRATLKALNSR 62

Query: 145 GRTPRKSLGQHYMLNTAINDKLVETAEVRDGDVVLEIGPGTGSLTNVL 2
           GR PRKSLGQHYMLN+ +N++LV  A V +GD+VLEIGPGTGSLTN+L
Sbjct: 63  GRRPRKSLGQHYMLNSEVNEQLVCAANVEEGDLVLEIGPGTGSLTNLL 110