BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00026737
         (274 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containi...   122   4e-26
emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]   122   4e-26
ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containi...    82   5e-14
ref|XP_003637737.1| Pentatricopeptide repeat-containing protein ...    80   2e-13
ref|XP_002320193.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12

>ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  122 bits (305), Expect = 4e-26
 Identities = 56/88 (63%), Positives = 71/88 (80%)
 Frame = -3

Query: 266 RALNYFKEMKLAGVQPDRVTWNSIISGYSQKGKFEEASIFFFKMRALTDFKPNVVSWTAL 87
           +AL    +MKL+GV+PD+VTWN+IISGY+Q G+FEEAS +F +M  L DFKPNVVSWTAL
Sbjct: 274 KALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTAL 333

Query: 86  ITGNEQNGCSYRALQVFSQMIMERVKPN 3
           I G+EQNG  + AL VF +M++E VKPN
Sbjct: 334 IAGSEQNGYDFEALSVFRKMVLEGVKPN 361


>emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  122 bits (305), Expect = 4e-26
 Identities = 56/88 (63%), Positives = 71/88 (80%)
 Frame = -3

Query: 266 RALNYFKEMKLAGVQPDRVTWNSIISGYSQKGKFEEASIFFFKMRALTDFKPNVVSWTAL 87
           +AL    +MKL+GV+PD+VTWN+IISGY+Q G+FEEAS +F +M  L DFKPNVVSWTAL
Sbjct: 274 KALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTAL 333

Query: 86  ITGNEQNGCSYRALQVFSQMIMERVKPN 3
           I G+EQNG  + AL VF +M++E VKPN
Sbjct: 334 IAGSEQNGYDFEALSVFRKMVLEGVKPN 361


>ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 44/89 (49%), Positives = 57/89 (64%)
 Frame = -3

Query: 269 NRALNYFKEMKLAGVQPDRVTWNSIISGYSQKGKFEEASIFFFKMRALTDFKPNVVSWTA 90
           + A     +MK  G++PD VTWNS++SGYS  G+ EEA     ++++L    PNVVSWTA
Sbjct: 451 DNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSL-GLTPNVVSWTA 509

Query: 89  LITGNEQNGCSYRALQVFSQMIMERVKPN 3
           +I+G  QN     ALQ FSQM  E VKPN
Sbjct: 510 MISGCCQNENYMDALQFFSQMQEENVKPN 538


>ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355503672|gb|AES84875.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 561

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 40/87 (45%), Positives = 56/87 (64%)
 Frame = -3

Query: 263 ALNYFKEMKLAGVQPDRVTWNSIISGYSQKGKFEEASIFFFKMRALTDFKPNVVSWTALI 84
           A+    +M   G+ PD VTWN ++SGYS +G+ +EA     ++++ +   PNVVSWTALI
Sbjct: 103 AVKLLNQMVEEGITPDLVTWNGLVSGYSMQGRIDEALTIINRIKS-SGITPNVVSWTALI 161

Query: 83  TGNEQNGCSYRALQVFSQMIMERVKPN 3
           +G  QN     AL++FSQM  E VKPN
Sbjct: 162 SGCSQNEKYMDALKIFSQMQAENVKPN 188


>ref|XP_002320193.1| predicted protein [Populus trichocarpa] gi|222860966|gb|EEE98508.1|
           predicted protein [Populus trichocarpa]
          Length = 498

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 37/89 (41%), Positives = 55/89 (61%)
 Frame = -3

Query: 269 NRALNYFKEMKLAGVQPDRVTWNSIISGYSQKGKFEEASIFFFKMRALTDFKPNVVSWTA 90
           + A      MK  G++PD +TWNS+++GYS +G  +EA      ++ ++   PNVVSWTA
Sbjct: 40  DHAKRLLNRMKEEGIKPDLITWNSLVAGYSMRGHTKEALALIHDIK-ISGLTPNVVSWTA 98

Query: 89  LITGNEQNGCSYRALQVFSQMIMERVKPN 3
           LI+G  QNG    +++ F QM  E +KPN
Sbjct: 99  LISGCSQNGNYSESIEAFVQMQEEGIKPN 127